Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D23
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 272 1e-73
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 272 1e-73
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 136 1e-32
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 135 3e-32
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 119 2e-27
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 118 5e-27
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 118 5e-27
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 118 5e-27
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 116 1e-26
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 87 7e-18
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 87 7e-18
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 81 6e-16
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 79 2e-15
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 79 2e-15
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 71 9e-13
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 62 3e-10
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 61 5e-10
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 60 1e-09
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 60 1e-09
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 60 1e-09
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 60 1e-09
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 59 2e-09
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 58 4e-09
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 58 4e-09
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 58 4e-09
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 58 5e-09
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 58 7e-09
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 57 9e-09
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 57 9e-09
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 57 1e-08
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 57 1e-08
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 56 2e-08
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 56 3e-08
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 56 3e-08
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 56 3e-08
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 55 5e-08
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 54 6e-08
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 53 1e-07
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 53 2e-07
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 53 2e-07
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 52 4e-07
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 50 1e-06
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 50 1e-06
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 50 1e-06
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 48 4e-06
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 48 4e-06
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 48 5e-06
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 47 1e-05
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 46 3e-05
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 44 1e-04
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 43 2e-04
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 42 5e-04
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 41 6e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 38 0.006
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 38 0.008
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 37 0.010
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 37 0.010
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 37 0.013
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 37 0.013
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 37 0.013
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 35 0.041
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 35 0.054
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 34 0.072
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 34 0.072
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 34 0.095
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 33 0.13
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 33 0.13
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 33 0.22
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 32 0.29
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 32 0.29
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 32 0.38
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 31 0.51
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 31 0.51
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 31 0.67
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 31 0.88
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 31 0.88
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 31 0.88
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ... 30 1.2
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 30 1.2
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 30 1.2
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 30 1.2
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t... 30 1.5
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t... 30 1.5
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 30 1.5
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 30 1.5
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 30 1.5
At2g33793.1 68415.m04145 expressed protein 30 1.5
At1g51940.1 68414.m05855 protein kinase family protein / peptido... 30 1.5
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 29 2.0
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 29 2.0
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 29 2.0
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 29 2.0
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 29 2.0
At1g72760.1 68414.m08413 protein kinase family protein contains ... 29 2.0
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 29 2.7
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 29 2.7
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 29 3.6
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 29 3.6
At5g53450.2 68418.m06643 protein kinase family protein contains ... 28 4.7
At5g53450.1 68418.m06642 protein kinase family protein contains ... 28 4.7
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 28 4.7
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 28 4.7
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 28 4.7
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 28 4.7
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 28 4.7
At5g48660.1 68418.m06022 expressed protein ; expression supporte... 28 6.2
At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5... 28 6.2
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 6.2
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 28 6.2
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ... 28 6.2
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 27 8.2
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 8.2
At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zi... 27 8.2
At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zi... 27 8.2
At3g16630.2 68416.m02126 kinesin motor family protein similar to... 27 8.2
At3g16630.1 68416.m02125 kinesin motor family protein similar to... 27 8.2
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 27 8.2
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 27 8.2
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 27 8.2
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 27 8.2
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 272 bits (668), Expect = 1e-73
Identities = 124/179 (69%), Positives = 153/179 (85%)
Frame = +1
Query: 118 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 297
R A +YRKKL++HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11 RTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70
Query: 298 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 477
E+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130
Query: 478 EDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
EDPG+++Y A+GGL +QIR+LRE IELPLMNPELF+RVGI PPKG LLYGPPGTGKTLL
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 189
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 272 bits (668), Expect = 1e-73
Identities = 125/179 (69%), Positives = 152/179 (84%)
Frame = +1
Query: 118 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 297
R A DYRKKL+ HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11 RTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70
Query: 298 TEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 477
E+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130
Query: 478 EDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
EDPG+++Y A+GGL +QIR+LRE IELPLMNPELF+RVGI PPKG LLYGPPGTGKTLL
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 189
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 136 bits (329), Expect = 1e-32
Identities = 75/188 (39%), Positives = 106/188 (56%)
Frame = +1
Query: 91 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 270
A+ E L++ Q + + ++ + L Q +L + +L+ LQ G
Sbjct: 24 AAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGS 83
Query: 271 IVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREV 450
VGEV+K + + K +VK +YVV + +D K+ TRVAL + + LP +V
Sbjct: 84 YVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKV 143
Query: 451 DPLVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGP 630
DPLV M E D TY IGGL +QI++++EVIELP+ +PELF +GI PKG LLYGP
Sbjct: 144 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGP 203
Query: 631 PGTGKTLL 654
PGTGKTLL
Sbjct: 204 PGTGKTLL 211
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 135 bits (326), Expect = 3e-32
Identities = 76/174 (43%), Positives = 103/174 (59%), Gaps = 1/174 (0%)
Frame = +1
Query: 136 DYRKKLMEHKEVE-SRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKF 312
D ++L K +RL+ R++L + +L+ LQ G VGEV+K + + K
Sbjct: 41 DELQRLQREKSYNLNRLEAQRNELNSRVRML---REELQLLQEPGSYVGEVVKVMGKNKV 97
Query: 313 IVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGD 492
+VK +YVV + +D KL TRVAL + + LP +VDPLV M E D
Sbjct: 98 LVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPD 157
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
TY IGGL +QI++++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLL
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 119 bits (286), Expect = 2e-27
Identities = 64/190 (33%), Positives = 110/190 (57%)
Frame = +1
Query: 85 MPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 264
M ST+D E L + R+ +E +++ +D+ K+L ++ +++ ++K +QSV
Sbjct: 20 MDLSTADEEDLYGRLKSLERQ--LEFTDIQEEYV--KDEQKNLKRELLRAQEEVKRIQSV 75
Query: 265 GQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPR 444
++G+ ++ + + IV +T G Y V +++ LK VAL + ++ LP
Sbjct: 76 PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 135
Query: 445 EVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLY 624
E D + +S + DV+Y IGG Q +++RE +ELPL + EL+ ++GI PP+G LLY
Sbjct: 136 EADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 195
Query: 625 GPPGTGKTLL 654
GPPGTGKT+L
Sbjct: 196 GPPGTGKTML 205
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 118 bits (283), Expect = 5e-27
Identities = 59/170 (34%), Positives = 101/170 (59%)
Frame = +1
Query: 145 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 324
+++ ++ +E +++LK ++ ++ + + L+ VG + + + E IV +
Sbjct: 69 ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128
Query: 325 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYX 504
+ GP Y VG +DK++L+ G + + L+++ L EVDP+V M E +Y
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188
Query: 505 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
IGGL+ QI++++E +ELPL +PEL+ +GI PPKG +LYG PGTGKTLL
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 238
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 118 bits (283), Expect = 5e-27
Identities = 59/170 (34%), Positives = 101/170 (59%)
Frame = +1
Query: 145 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 324
+++ ++ +E +++LK ++ ++ + + L+ VG + + + E IV +
Sbjct: 69 ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128
Query: 325 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYX 504
+ GP Y VG +DK++L+ G + + L+++ L EVDP+V M E +Y
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188
Query: 505 AIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
IGGL+ QI++++E +ELPL +PEL+ +GI PPKG +LYG PGTGKTLL
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 238
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 118 bits (283), Expect = 5e-27
Identities = 55/126 (43%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Frame = +1
Query: 280 EVLKQLTEE-KFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDP 456
+++ TE+ K+++ ++VVG ++ ++ G RV +D I LP ++DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 457 LVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 636
V M+ E+ DVTY +GG +EQI ++REV+ELP+++PE FV++GI PPKG L YGPPG
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212
Query: 637 TGKTLL 654
TGKTLL
Sbjct: 213 TGKTLL 218
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 116 bits (279), Expect = 1e-26
Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Frame = +1
Query: 280 EVLKQLTEE-KFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDP 456
+++ TE+ K++V +YVVG + ++ G RV +D I LP ++DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 457 LVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPG 636
V M+ E+ D TY IGG +EQI ++REV+ELP+++PE FVR+GI PPKG L YGPPG
Sbjct: 190 SVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPG 249
Query: 637 TGKTLL 654
+GKTL+
Sbjct: 250 SGKTLV 255
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 87.4 bits (207), Expect = 7e-18
Identities = 43/97 (44%), Positives = 61/97 (62%)
Frame = +1
Query: 364 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLR 543
+D + LK G V ++ + I+ LP E D V M ++ Y IGGL++QI++L
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 544 EVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
E I LP+ + E F ++G+ PPKG LLYGPPGTGKTL+
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLM 221
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 87.4 bits (207), Expect = 7e-18
Identities = 44/97 (45%), Positives = 61/97 (62%)
Frame = +1
Query: 364 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLR 543
+D + LK G V ++ + I+ LP E D V M ++ Y IGGL++QI++L
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 544 EVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
E I LP+ + E F ++GI PPKG LLYGPPGTGKTL+
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLM 220
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 81.0 bits (191), Expect = 6e-16
Identities = 32/55 (58%), Positives = 46/55 (83%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
DV Y +GG+++Q+ Q+RE++ELPL +P+LF +G+ PPKG LLYGPPG+GKTL+
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 257
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/55 (49%), Positives = 40/55 (72%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V++ IGGL+ R+L+E ++ P+ +PE F + G++P KG L YGPPG GKTLL
Sbjct: 476 NVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 530
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 79.4 bits (187), Expect = 2e-15
Identities = 31/55 (56%), Positives = 46/55 (83%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V Y +GG+++Q+ Q+RE++ELPL +P+LF +G+ PPKG LLYGPPG+GKTL+
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 257
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/55 (49%), Positives = 40/55 (72%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V++ IGGL+ R+L+E ++ P+ +PE F + G++P KG L YGPPG GKTLL
Sbjct: 476 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 530
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 79.4 bits (187), Expect = 2e-15
Identities = 31/55 (56%), Positives = 46/55 (83%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V Y +GG+++Q+ Q+RE++ELPL +P+LF +G+ PPKG LLYGPPG+GKTL+
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 258
Score = 64.1 bits (149), Expect = 8e-11
Identities = 27/55 (49%), Positives = 40/55 (72%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V++ IGGL+ R+L+E ++ P+ +PE F + G++P KG L YGPPG GKTLL
Sbjct: 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 70.5 bits (165), Expect = 9e-13
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
D+ + IGGL E I L+E++ PL+ PE F ITPP+G LL GPPGTGKTL+
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLI 431
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLL 654
DVT+ IG L++ L+E++ LPL PELF + +T P KG LL+GPPGTGKT+L
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTML 871
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 61.3 bits (142), Expect = 5e-10
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +1
Query: 451 DPLVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGIT-PPKGCLLYG 627
D + ++ + D DV + +IGGL+ + L E++ LPL PELF + P KG LLYG
Sbjct: 67 DVIACDVINPDHIDVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYG 126
Query: 628 PPGTGKTLL 654
PPGTGKT+L
Sbjct: 127 PPGTGKTML 135
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 60.5 bits (140), Expect = 1e-09
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Frame = +1
Query: 70 FKLFTMPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK 249
+KLFT P E + ++K+L E + R+ R + +L K ++ E
Sbjct: 201 YKLFTNVMRLHP--PKEEDTLRLFKKQLGEDR----RIVISRSNINELLKALEEHELLCT 254
Query: 250 ALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIM 429
L V G +L + EK I A N Y+ C L K R +L+++ +
Sbjct: 255 DLYQVNTD-GVILTKQKAEKAIGWAKN--HYLASCPVPLVKGGRLSLPRESLEISIARLR 311
Query: 430 RHLPREVDPL--VYNMSHED-----------PGD--VTYXAIGGLQEQIRQLREVIELPL 564
+ + P + N++ ++ PG+ V + IG L++ + L E++ LP+
Sbjct: 312 KLEDNSLKPSQNLKNIAKDEYERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPM 371
Query: 565 MNPELFVRVGITPP-KGCLLYGPPGTGKTLL 654
PELF R + P KG LL+GPPGTGKTLL
Sbjct: 372 RRPELFARGNLLRPCKGILLFGPPGTGKTLL 402
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGIT-PPKGCLLYGPPGTGKTLL 654
DV + +IGGL+ + L E++ LPL PELF + P KG LLYGPPGTGKT+L
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTML 138
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/54 (50%), Positives = 37/54 (68%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+T+ + G+ E +L E++E L NPE +VR+G PP+G LL G PGTGKTLL
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLL 374
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/52 (46%), Positives = 39/52 (75%)
Frame = +1
Query: 499 YXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ ++ GL+ + ++EV+ +PL+ PE F +G+TPP+G LL+G PGTGKTL+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLV 769
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +1
Query: 481 DPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
D +T+ + G+ E +L E++E L NP+ +VR+G PP+G LL G PGTGKTLL
Sbjct: 322 DGETITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLL 378
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLL 654
V++ IG L+ L+E++ LPL PELF + +T P KG LL+GPPGTGKT+L
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTML 1014
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+VT+ IG L E L+E++ LPL P+LF + P +G LL+GPPGTGKT+L
Sbjct: 517 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTML 571
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+VT+ IG L E L+E++ LPL P+LF + P +G LL+GPPGTGKT+L
Sbjct: 512 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTML 566
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Frame = +1
Query: 484 PGD--VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLL 654
PG+ V + IG L+ + L E++ LP+ PELF R + P KG LL+GPPGTGKTLL
Sbjct: 142 PGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLL 201
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLL 654
V++ IG L+ L+E++ LPL PELF + +T P KG LL+GPPGTGKT+L
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTML 1001
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
VT+ + G + +L+EV++ L NP+ + +G PKGCLL GPPGTGKTLL
Sbjct: 247 VTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 299
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
VT+ IG L E L+E++ LPL P+LF + P +G LL+GPPGTGKT++
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMM 464
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/54 (46%), Positives = 38/54 (70%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
V + + G+ E + +L+E+++ L NP+LF ++GI PP G LL GPPG GKTL+
Sbjct: 427 VKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLV 479
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/54 (42%), Positives = 39/54 (72%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
VT+ +GGL++ ++L++ +E P+ + FV++GI+P +G LL+GPPG KT L
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTL 336
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/49 (48%), Positives = 31/49 (63%)
Frame = +1
Query: 508 IGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
IGG + ++ LRE+I P P +G+ P+G LLYGPPGTGKT L
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSL 72
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/53 (41%), Positives = 35/53 (66%)
Frame = +1
Query: 496 TYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
T+ GG+++ + +L + P++NPE F ++G+ PP G L +GPPG GKT L
Sbjct: 231 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKL 283
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
DV + +GGL Q I P+ P+++ G+ G LLYGPPG GKTL+
Sbjct: 524 DVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLI 578
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/54 (51%), Positives = 33/54 (61%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
VT+ + G+ E + EV+E L PE F VG PKG LL GPPGTGKTLL
Sbjct: 224 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLL 276
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
V++ + G + +L+EV++ L NP+ + +G PKGCLL GPPGTGKTLL
Sbjct: 259 VSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 311
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/54 (51%), Positives = 33/54 (61%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
VT+ + G+ E + EV+E L PE F VG PKG LL GPPGTGKTLL
Sbjct: 217 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLL 269
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/62 (46%), Positives = 39/62 (62%)
Frame = +1
Query: 469 MSHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 648
+S E+ VT+ G + R+L+E++ + L N E F GI PKG LL+GPPGTGKT
Sbjct: 305 ISAEEKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKT 363
Query: 649 LL 654
LL
Sbjct: 364 LL 365
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
V + +GG E QL E +E P + + F R+G PP G L++GPPG KTL+
Sbjct: 721 VNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLM 774
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 508 IGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+GGL ++ LR++I+ + L +G+ P KG L++GPPGTGKT L
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSLS-SLGLRPTKGVLIHGPPGTGKTSL 434
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/57 (50%), Positives = 35/57 (61%)
Frame = +1
Query: 484 PGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
PG V + + GL E R L E + LPL PE F + P KG L++GPPGTGKTLL
Sbjct: 234 PG-VRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLL 288
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+T+ + G+ E + E++E L PE F +G PKG LL GPPGTGKTLL
Sbjct: 220 ITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLL 272
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+V + +GGL++ + + ++LPL++ +LF G+ G LLYGPPGTGKTLL
Sbjct: 654 NVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLL 707
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPP-KGCLLYGPPGTGKTLL 654
VT+ IG L+ L+E++ LP PELF + +T P G LL+GP GTGKT+L
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTML 786
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/53 (49%), Positives = 33/53 (62%)
Frame = +1
Query: 496 TYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
T+ + G + ++L EV+E L NP F R+G PKG LL G PGTGKTLL
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 411
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
++ + +I GL+ + L+E + +P+ P F + +TP KG LL+GPPGTGKT+L
Sbjct: 108 NIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTML 161
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
++ + +I GL+ + L+E + +P+ P F + +TP KG LL+GPPGTGKT+L
Sbjct: 99 NIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTML 152
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +1
Query: 481 DPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
DP +V + I GL+ + + E++ PL+ P++F +P KG LL+GPPGTGKT++
Sbjct: 4 DP-NVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPGTGKTMI 59
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +1
Query: 508 IGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ G+ E +L E++ L +P+ F R+G PKG LL GPPGTGKT+L
Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTML 276
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + + G +E +++ E + L NP+ + +G PKG LL GPPGTGKTLL
Sbjct: 324 IYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLL 376
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + + G E +++ E + L NP+ + +G PKG LL GPPGTGKTLL
Sbjct: 319 IYFKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLL 371
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +1
Query: 472 SHEDPGDVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 648
S + G + + +GG+ + ++E+IELP P++F + + LLYGPPG GKT
Sbjct: 834 SASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKT 892
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 580 FVRVGITPPKGCLLYGPPGTGKTLL 654
F + I P L+YGPPG+GKT+L
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTIL 609
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
DV + + GL + +L E+++ + E++ R G+ P G LL GPPG GKTLL
Sbjct: 406 DVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLL 459
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 508 IGGLQEQIRQL-REVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
IGGL + + R + P + R+GI KG LL+GPPGTGKTL+
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLM 266
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
V + + GL + L E++ LP +LF + P +G LL+GPPG GKT+L
Sbjct: 213 VKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTML 265
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
++ + + GL+ + L+E + LP+ P+ F P + LLYGPPGTGK+ L
Sbjct: 128 NIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYL 181
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
V + + G+ +L E++ L + ++G P+G LL GPPGTGKTLL
Sbjct: 331 VGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVLLVGPPGTGKTLL 383
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 532 RQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+++ + +E L E + RVG +G LLYGPPGTGK+ L
Sbjct: 219 KKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSL 259
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 532 RQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
R + E ++ + E + RVG +G LLYGPPGTGK+ L
Sbjct: 229 RDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSL 269
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 532 RQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
R + E ++ + E + RVG +G LLYGPPGTGK+ L
Sbjct: 229 RDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSL 269
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 496 TYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
T+ + +E R + ++ + + + RVG +G LLYGPPGTGKT L
Sbjct: 209 TFDTMAMNEELKRSVMGDLDRFIRRKDFYKRVGKPWKRGYLLYGPPGTGKTSL 261
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 517 LQEQIRQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
++ ++ EV+ L NP+ F +G P+G L+ G GTGKT L
Sbjct: 429 IESMREEINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSL 473
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 532 RQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+++ + +E L E + RVG +G LLYGPPGTGK+ L
Sbjct: 220 KKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSL 260
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 532 RQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
R + E ++ + + + RVG +G LLYGPPGTGK+ L
Sbjct: 221 RSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSL 261
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + RVG +G LLYGPPGTGK+ L
Sbjct: 289 DFYKRVGKAWKRGYLLYGPPGTGKSSL 315
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Frame = +1
Query: 490 DVTYXAIGGLQEQIRQLREVIELPLMNPELF--------VRVGITPPKGCLLYGPPGTGK 645
++++ I G +Q R++ + I + L +PE++ + P+ L GPPGTGK
Sbjct: 315 EISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPPGTGK 374
Query: 646 T 648
T
Sbjct: 375 T 375
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
E + R+G +G LLYGPPGTGK+ +
Sbjct: 226 EYYDRIGKAWKRGYLLYGPPGTGKSTM 252
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 33.9 bits (74), Expect = 0.095
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 532 RQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ L E ++ + + RVG +G LLYGPPGTGK+ L
Sbjct: 223 KNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSL 263
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
E + ++G +G LLYGPPGTGK+ +
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTM 257
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ F VG +G LLYGPPGTGK+ L
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSL 47
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKT 648
+ F VG +G LLYGPPGTGK+
Sbjct: 229 DFFKSVGRAWKRGYLLYGPPGTGKS 253
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + ++G +G LLYGPPGTGK+ +
Sbjct: 226 DYYKKIGKAWKRGYLLYGPPGTGKSTM 252
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 202 LKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 309
L D KQY + D+K+++ +G+ GE K +T E+
Sbjct: 74 LDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEE 109
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 568 NPELFVRVGITPPKGCLLYGPPGTGKTL 651
NP + + +G LL GPPGTGKTL
Sbjct: 514 NPMQYYEKDVAFVRGVLLSGPPGTGKTL 541
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 580 FVRVGITPPKGCLLYGPPGTGKT 648
+ R G +G LLYGPPGTGK+
Sbjct: 229 YERTGRAWKRGYLLYGPPGTGKS 251
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
E + ++G +G LL+GPPGTGK+ +
Sbjct: 226 EYYKKIGKAWKRGYLLHGPPGTGKSTM 252
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 580 FVRVGITPPKGCLLYGPPGTGKTLL 654
+ + G +G LLYGPPGTGK+ L
Sbjct: 230 YQKTGRAWKRGYLLYGPPGTGKSSL 254
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + ++G +G LL+GPPGTGK+ +
Sbjct: 233 DYYKKIGKAWKRGYLLFGPPGTGKSTM 259
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + ++G +G LL+GPPGTGK+ +
Sbjct: 230 DYYKKIGKAWKRGYLLFGPPGTGKSTM 256
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + +VG +G LL+GPPGTGK+ +
Sbjct: 233 DYYKKVGKPWKRGYLLFGPPGTGKSTM 259
>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 548
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +1
Query: 163 KEVESRLKEGRDQLKD-LTKQYDKSENDLKALQSVG--QIVGEVLKQLTEEKFIVKATNG 333
KE+ S E D+L+D L KQ E L G +V E++K E KA NG
Sbjct: 49 KEILSNHMESEDELRDLLRKQNQCGETALYVAAEYGDADVVAELIKYYDLEDAETKARNG 108
Query: 334 --PRYVVGCRRQLDKNKLKGGTRVALDMT 414
P ++ + +LD ++ L MT
Sbjct: 109 FDPFHIAAKQGELDVLRVLMEEHPELSMT 137
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 580 FVRVGITPPKGCLLYGPPGTGKT 648
+ + G +G LLYGPPGTGK+
Sbjct: 229 YQKTGRAWKRGYLLYGPPGTGKS 251
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + RVG + LYGPPGTGK+ L
Sbjct: 210 DYYKRVGKAWKRSYFLYGPPGTGKSSL 236
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 574 ELFVRVGITPPKGCLLYGPPGTGKTLL 654
+ + +VG +G LL+GPPGTGK+ +
Sbjct: 229 DYYRKVGKPWKRGYLLFGPPGTGKSTM 255
>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 29.9 bits (64), Expect = 1.5
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Frame = +1
Query: 148 KLMEHKEVESRLKEGRD-QLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 324
++ + E + K R+ +L L K+ KSE + LQ++ Q VL++ TEE A
Sbjct: 636 RMKQEAEQFRQWKASREKELLQLRKEGRKSEYERHKLQALNQRQKMVLQRKTEE--AAMA 693
Query: 325 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTT--LTIMRHLPREVDPL--VYNMSHEDPGD 492
T + ++ R+ + G + T ++ R L E++ + V+ + HE
Sbjct: 694 TKRLKELLEARKSSPREHSAGTNGFGTNGQTNEKSLQRWLDHELEVMVNVHEVRHEYEKQ 753
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKG 612
A L E++ LR+V E F G++PP+G
Sbjct: 754 SHVRA--ALAEELAVLRQVDE--------FAVKGLSPPRG 783
>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 29.9 bits (64), Expect = 1.5
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Frame = +1
Query: 148 KLMEHKEVESRLKEGRD-QLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKA 324
++ + E + K R+ +L L K+ KSE + LQ++ Q VL++ TEE A
Sbjct: 636 RMKQEAEQFRQWKASREKELLQLRKEGRKSEYERHKLQALNQRQKMVLQRKTEE--AAMA 693
Query: 325 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTT--LTIMRHLPREVDPL--VYNMSHEDPGD 492
T + ++ R+ + G + T ++ R L E++ + V+ + HE
Sbjct: 694 TKRLKELLEARKSSPREHSAGTNGFGTNGQTNEKSLQRWLDHELEVMVNVHEVRHEYEKQ 753
Query: 493 VTYXAIGGLQEQIRQLREVIELPLMNPELFVRVGITPPKG 612
A L E++ LR+V E F G++PP+G
Sbjct: 754 SHVRA--ALAEELAVLRQVDE--------FAVKGLSPPRG 783
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 601 PPKGCLLYGPPGTGKTL 651
P + L YGPPGTGKT+
Sbjct: 397 PFRNILFYGPPGTGKTM 413
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 595 ITPPKGCLLYGPPGTGKTLL 654
++P KG LYG GTGKT+L
Sbjct: 130 VSPVKGLYLYGGVGTGKTML 149
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +1
Query: 73 KLFTMPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQ-LKDLTKQYDK--SEND 243
KL T+P S SD+ P + R+KL + +E++ KE + LK+L ++ S ++
Sbjct: 383 KLRTVPLSESDIFPSSFHKTPEGRRKLTK-EELQKFTKESTENALKELVSSPEEGSSGSE 441
Query: 244 LKALQSVGQIVGEVLKQLTEEKFIVKATNGP 336
+A + + VGE K+ +++ K N P
Sbjct: 442 KQAARGTSEPVGECTKK-KKQRVRYKERNKP 471
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 100 SDMEPLREKAFQDYRKKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIV 276
S ++ REKA +D RKK E V + +K D+LK +K + +N KAL +
Sbjct: 45 SALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELK--SKLEKERQNFSKALSKSSKEC 102
Query: 277 GEVLK 291
+LK
Sbjct: 103 ENILK 107
>At1g51940.1 68414.m05855 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains protein kinases ATP-binding region signature,
PROSITE:PS00107
Length = 651
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -2
Query: 242 SFSLLSYCLVKSFSWSRPSLSRDSTSLCS--MSFFL*SWKAFSLNGSMSDVL 93
+F + L+ SFS S+P D+T LCS ++F ++FS+ SM DVL
Sbjct: 4 TFYIFFLSLLPSFSSSKPMNCSDTTRLCSSFLAFKPNQNQSFSVIQSMFDVL 55
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 601 PPKGCLLYGPPGTGKTLL 654
P + + YGPPGTGKT++
Sbjct: 369 PFRNMMFYGPPGTGKTMV 386
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 577 LFVRVGITPPKGCLLYGPPGTGKTLL 654
L + +P KG LYG GTGKT+L
Sbjct: 152 LMPQTSYSPVKGLYLYGGVGTGKTML 177
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 94 STSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSEN 240
ST E R++ F+DY L KE +R+K+ + +D+ +++DK +
Sbjct: 797 STIGDESFRKRCFEDYVSLL---KEQSNRIKQNKKVPEDVREEHDKGRD 842
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 601 PPKGCLLYGPPGTGKTL 651
P + LL+GPPGTGKT+
Sbjct: 396 PFRNILLHGPPGTGKTM 412
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 601 PPKGCLLYGPPGTGKTLL 654
P + + YGPPGTGKT++
Sbjct: 384 PFRNMMFYGPPGTGKTMV 401
>At1g72760.1 68414.m08413 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 697
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 514 GLQEQIRQLREVIEL--PLMNPELFVRVGITPPKGCLLY 624
G+ E ++Q ++ IE+ + +P + + +G P GCL+Y
Sbjct: 414 GITEGLKQFQQEIEVLSSMRHPNMVILLGACPEYGCLVY 452
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 280 EVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVA 402
EVLK L E + +G Y GC R +++ ++ GG+ A
Sbjct: 50 EVLKALCNEAGWIVEPDGTTYRKGCSRPVERMEIGGGSATA 90
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 616 LLYGPPGTGKT 648
LLYGPPGTGKT
Sbjct: 76 LLYGPPGTGKT 86
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +1
Query: 163 KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFI 315
+E+++RLK+ + L + T D + + L+++GQ++ + QL + K +
Sbjct: 245 QELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLYDCKLV 295
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 607 KGCLLYGPPGTGKTLL 654
+G LL+GPPGTGK+ +
Sbjct: 229 RGYLLFGPPGTGKSTM 244
>At5g53450.2 68418.m06643 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 590
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 109 EPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 288
E L EK + KK++ KE S L K ++ + + + N + S G ++GEV
Sbjct: 489 EGLAEKLETEKWKKVVPFKEFPSSLPVA----KLVSGEIEVTMNMNDHIDSPGSVIGEVR 544
Query: 289 KQLTEEKF 312
KQ+ E F
Sbjct: 545 KQIPPEMF 552
>At5g53450.1 68418.m06642 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 670
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 109 EPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 288
E L EK + KK++ KE S L K ++ + + + N + S G ++GEV
Sbjct: 569 EGLAEKLETEKWKKVVPFKEFPSSLPVA----KLVSGEIEVTMNMNDHIDSPGSVIGEVR 624
Query: 289 KQLTEEKF 312
KQ+ E F
Sbjct: 625 KQIPPEMF 632
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 133 QDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ----SVGQIVGEVLKQLT 300
+D + + K++E +L++ ++ D+TK+ + S N + LQ + +++ + K+L
Sbjct: 344 EDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVLLDEEKKLE 403
Query: 301 EEKFIVKA-TNGPR 339
E K I K T G R
Sbjct: 404 EIKAIAKVETEGYR 417
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 607 KGCLLYGPPGTGKTLL 654
K LL GPPGTGKT L
Sbjct: 67 KALLLAGPPGTGKTAL 82
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Frame = +1
Query: 577 LFVRVGITPP-----KGCLLYGPPGTGKTLL 654
LF + G+ P + LL+GPPGTGKT L
Sbjct: 188 LFTQKGVNPNLVSWNRIILLHGPPGTGKTSL 218
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 145 KKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 321
K + +H K E RLK+ +K L + S DLK ++V + + + +T+E+ +K
Sbjct: 773 KSIKDHDKNREGRLKDLEKNIKTLKARIQASSKDLKGHENVRERLVMEQEAVTQEQSYLK 832
Query: 322 A 324
+
Sbjct: 833 S 833
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 532 RQLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLL 654
R+L + I+L + + + RVG + LL+G PG GKT L
Sbjct: 175 RRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSL 215
>At5g48660.1 68418.m06022 expressed protein ; expression supported
by MPSS
Length = 219
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +1
Query: 100 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 258
++++ EKA ++ ++ ++ + RLK+ + K+ K+ + +E + ALQ
Sbjct: 137 TELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKLETAETHVTALQ 189
>At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5
protein GI:2251085 from [Arabidopsis thaliana]
Length = 168
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 181 LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 309
L E +++KDL + + E L LQ+ Q++ +LK T K
Sbjct: 113 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILKNTTGNK 155
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 583 VRVGITPPKGCLLYGPPGTGKT 648
+ VG++ L+ GPPGTGKT
Sbjct: 266 IDVGLSRKSFVLIQGPPGTGKT 287
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 535 QLREVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKT 648
+++ +E L + + R+G + LLYGP GTGK+
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKS 245
>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 893
Score = 27.9 bits (59), Expect = 6.2
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 118 REKAFQDYRKKLMEHKEVE-SRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 294
R +D L+ ++VE RL R K+LT Y ++ L+ V ++ GEV
Sbjct: 75 RVATVEDIIITLLRDRDVEIQRLCLCRFCSKNLTTSYRYGKSVFLRLREVEKLKGEVFGV 134
Query: 295 LTEEKFIVKATNGPRY--VVGCRRQLDK 372
+TE+ P +VG ++ LDK
Sbjct: 135 ITEQASTSAFEERPLQPTIVGQKKMLDK 162
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 595 ITPPKGCLLYGPPGTGKTLL 654
I P + LL GPPG GKT L
Sbjct: 159 IRPKRMTLLLGPPGCGKTTL 178
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 166 EVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 264
++++R+ E DQL DLT + ++E D + Q+V
Sbjct: 478 KLKTRIAELEDQLSDLTAERYENERDSRLTQAV 510
>At3g48670.2 68416.m05314 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 647
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 145 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 309
K + E E E+R +E Q +L + ++ + D+K ++ + + E L QL EEK
Sbjct: 251 KTIAELTEEEARKQELLVQ--NLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEK 303
>At3g48670.1 68416.m05313 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 647
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 145 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEK 309
K + E E E+R +E Q +L + ++ + D+K ++ + + E L QL EEK
Sbjct: 251 KTIAELTEEEARKQELLVQ--NLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEK 303
>At3g16630.2 68416.m02126 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 27.5 bits (58), Expect = 8.2
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 1/149 (0%)
Frame = +1
Query: 205 KDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLK 384
K+ + Y+ + N + Q+ + +G + K E + K VV +R L+K +
Sbjct: 155 KEFEEDYNLAANRQQRQQTEAEPLGLLPKSDKENNSVAKIK-----VVVRKRPLNKKETA 209
Query: 385 GGTRVALDMTTLTIMRHLPR-EVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELP 561
+ ++ ++ H PR +VD Y HE D E R E P
Sbjct: 210 KKEEDVVTVSDNSLTVHEPRVKVDLTAYVEKHEFCFDAVLDEDVSNDEVYRATIE----P 265
Query: 562 LMNPELFVRVGITPPKGCLLYGPPGTGKT 648
++ P +F R T C YG G+GKT
Sbjct: 266 II-PIIFQRTKAT----CFAYGQTGSGKT 289
>At3g16630.1 68416.m02125 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 27.5 bits (58), Expect = 8.2
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 1/149 (0%)
Frame = +1
Query: 205 KDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKLK 384
K+ + Y+ + N + Q+ + +G + K E + K VV +R L+K +
Sbjct: 155 KEFEEDYNLAANRQQRQQTEAEPLGLLPKSDKENNSVAKIK-----VVVRKRPLNKKETA 209
Query: 385 GGTRVALDMTTLTIMRHLPR-EVDPLVYNMSHEDPGDVTYXAIGGLQEQIRQLREVIELP 561
+ ++ ++ H PR +VD Y HE D E R E P
Sbjct: 210 KKEEDVVTVSDNSLTVHEPRVKVDLTAYVEKHEFCFDAVLDEDVSNDEVYRATIE----P 265
Query: 562 LMNPELFVRVGITPPKGCLLYGPPGTGKT 648
++ P +F R T C YG G+GKT
Sbjct: 266 II-PIIFQRTKAT----CFAYGQTGSGKT 289
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 595 ITPPKGCLLYGPPGTGKTLL 654
I+P + LL GPPG GKT L
Sbjct: 162 ISPGRLTLLLGPPGCGKTTL 181
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 157 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEEKFIVK 321
EH+E+ +LKE + +L + +K ++ K L ++ GE L ++ VK
Sbjct: 154 EHQEILKKLKESDEICGNLRVETEKLTSENKELNEKLEVAGETESDLNQKLEDVK 208
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 616 LLYGPPGTGKT 648
L YGPPGTGKT
Sbjct: 34 LFYGPPGTGKT 44
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 616 LLYGPPGTGKT 648
L YGPPGTGKT
Sbjct: 46 LFYGPPGTGKT 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,473,785
Number of Sequences: 28952
Number of extensions: 262828
Number of successful extensions: 1114
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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