Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D22
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 95 4e-20
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 93 1e-19
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 62 2e-10
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 62 2e-10
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 53 2e-07
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 52 4e-07
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 50 1e-06
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 50 1e-06
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 43 1e-04
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 42 3e-04
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 39 0.002
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 38 0.004
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 38 0.004
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 37 0.009
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 33 0.19
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 33 0.19
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 32 0.25
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 32 0.33
At5g55560.1 68418.m06923 protein kinase family protein contains ... 31 0.44
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 31 0.44
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 30 1.0
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 30 1.3
At3g53610.2 68416.m05922 Ras-related GTP-binding protein, putati... 29 2.4
At3g53610.1 68416.m05921 Ras-related GTP-binding protein, putati... 29 2.4
At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putati... 29 2.4
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL... 28 4.1
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi... 28 4.1
At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr... 28 4.1
At5g59840.1 68418.m07503 Ras-related GTP-binding family protein ... 28 5.4
At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putati... 28 5.4
At3g46060.1 68416.m04984 Ras-related protein (ARA-3) / small GTP... 28 5.4
At1g36550.1 68414.m04543 hypothetical protein weak similarity to... 28 5.4
At3g08730.1 68416.m01015 serine/threonine protein kinase (PK1) (... 27 9.5
At3g08720.2 68416.m01014 serine/threonine protein kinase (PK19) ... 27 9.5
At3g08720.1 68416.m01013 serine/threonine protein kinase (PK19) ... 27 9.5
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 27 9.5
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 94.7 bits (225), Expect = 4e-20
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Frame = +3
Query: 147 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGM 323
MS++ PP+LKK+MDKKL IKLNA R VTG LRGFD FMNLV+D +V E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 59
Query: 324 VVIRGNSIIMLESLD 368
VVIRGNSI+ +E+L+
Sbjct: 60 VVIRGNSIVTVEALE 74
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Frame = +3
Query: 147 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGM 323
MS++ PP+LKK+MDKKL IKLNA R V G LRGFD FMNLV+D +VE D + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGD-DKTDIGM 59
Query: 324 VVIRGNSIIMLESLD 368
VVIRGNSI+ +E+L+
Sbjct: 60 VVIRGNSIVTVEALE 74
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
Frame = +3
Query: 168 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 323
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+VE +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 324 VVIRGNSIIMLESLD 368
+V RG +++++ D
Sbjct: 70 IVCRGTAVMLVSPTD 84
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
Frame = +3
Query: 168 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGM 323
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+VE +D Q +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 324 VVIRGNSIIMLESLD 368
+V RG +++++ D
Sbjct: 70 IVCRGTAVMLVSPTD 84
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = +3
Query: 171 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE---ECKDG-QRNNVGMVVIRG 338
L+ +D+ +S+ N GR + GVL+GFD N++LDES E K+G Q++ +G+ +IRG
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRG 66
Query: 339 NSIIMLESLD 368
++I ++ LD
Sbjct: 67 DNIGVIGELD 76
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 171 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN---NVGMVVIRGN 341
L ++DKKL + L GR + G+LR FD F N VL+E+ E G +G+ +IRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 342 SIIMLESLD 368
+++++ LD
Sbjct: 75 NVVLIGELD 83
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 171 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN---NVGMVVIRGN 341
L ++D+KL + L GR + G LR FD F N VL+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 342 SIIMLESLD 368
+++++ LD
Sbjct: 75 NVVLIGELD 83
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 171 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN---NVGMVVIRGN 341
L ++D+KL + L GR + G LR FD F N VL+ + E G++ +G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 342 SIIMLESLD 368
+++++ LD
Sbjct: 75 NVVLIGELD 83
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 171 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 347
LK K + +KLN+G G+L D +MN+ ++++ EE +GQ +N G +RGN++
Sbjct: 19 LKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQT-EEYVNGQLKNTYGDAFVRGNNV 77
Query: 348 IMLES 362
+ + +
Sbjct: 78 LYIST 82
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 171 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 347
LK + + +KLN+G G L D +MN+ ++++ EE +GQ +N G IRGN++
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNV 77
Query: 348 IMLESLD 368
+ + +++
Sbjct: 78 LYISTVN 84
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 225 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 356
+ G + GFD +MNLVLDE+ E K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLM 83
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 225 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 356
+ G + GFD +MNLVLDE+ E K R +G ++++G++I ++
Sbjct: 39 IEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLM 83
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 165 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGN 341
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNT-EEYIDGQLTGNLGEILIRCN 68
Query: 342 SIIMLESL 365
+++ + +
Sbjct: 69 NVLYVRGV 76
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +3
Query: 150 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNV 317
S+ P EL + + K+ + + + + G+L+GFD ++N+VL++ E +G+R +
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 318 GMVVIRGNSIIML 356
+++ GN+I +L
Sbjct: 66 DQILLNGNNIAIL 78
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Frame = +3
Query: 147 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK----DGQ--- 305
MS + ++ +F++ ++ + + GR + G FD MNLVL + E K G+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 306 -----RNNVGMVVIRGNSIIML 356
R +G+V++RG +I +
Sbjct: 61 EEREDRRTLGLVLLRGEEVISM 82
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Frame = +3
Query: 147 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK----DGQ--- 305
MS + ++ +F++ ++ + + GR + G FD MNLVL + E K G+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 306 -----RNNVGMVVIRGNSIIML 356
R +G+V++RG +I +
Sbjct: 61 EEREDRRTLGLVLLRGEEVISM 82
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Frame = +3
Query: 147 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-----ECKDGQRN 311
MS + ++ +F++ ++ + + GR + G FD MNLVL + E K ++
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 312 N--------VGMVVIRGNSIIML 356
N +G+V++RG +I +
Sbjct: 61 NEEREERRTLGLVLLRGEEVISM 83
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
similar to disease resistance protein RPP1-WsB
(GI:3860165) [Arabidopsis thaliana]
Length = 1996
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 196 NFLSMNFFNSGGCAFDIVMCFLKYYNTGINVIVVDFCILDEFPTHRILSMNLTFLLYS 23
N S++FFN GC F + +T I+ +V+D +++E PT IL L L+ S
Sbjct: 636 NLASLDFFNMHGC-FQLKK--FPGISTHISRLVIDDTLVEELPTSIILCTRLRTLMIS 690
>At5g55560.1 68418.m06923 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 314
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +3
Query: 147 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 326
++K + PE K F++K ++ + A + +L DPF + +LD+ E+ ++ N G +
Sbjct: 255 LNKVNDPEAKAFIEKCIA-QPRARPSAAELL--CDPFFDGILDDDDEDGENNDNNGAGRI 311
Query: 327 VI 332
V+
Sbjct: 312 VV 313
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Frame = +3
Query: 183 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-------------DESVEECKDGQRNNVGM 323
+D+++ +KL + R + G L FD +N++L DE+ EE + +
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79
Query: 324 VVIRGNSIIML 356
+ +RG+ +I++
Sbjct: 80 LFVRGDGVILV 90
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 171 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN-NVGMVVIRGNSI 347
LK + ++L G G L D +MN+ L E + KDG R + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 66
Query: 348 IMLESLDRL 374
L D +
Sbjct: 67 KYLRVPDEV 75
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Frame = +3
Query: 183 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-------------DESVEECKDGQRNNVGM 323
+++++ +KL + R + G L FD +N++L DE+ EE + V
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79
Query: 324 VVIRGNSIIML 356
+ +RG+ +I++
Sbjct: 80 LFVRGDGVILV 90
>At3g53610.2 68416.m05922 Ras-related GTP-binding protein, putative
similar to Ras-related protein ARA-3 SP:P28186 from
[Arabidopsis thaliana]
Length = 216
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 356 QHYNTVTTNYHHPNIVTLTVFTLLD*FIKN*IHEWIKT-AQHTGNSATRI 210
+ + T+TT Y+ + L V+ + D N I WI+ QH +S +I
Sbjct: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKI 124
>At3g53610.1 68416.m05921 Ras-related GTP-binding protein, putative
similar to Ras-related protein ARA-3 SP:P28186 from
[Arabidopsis thaliana]
Length = 216
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 356 QHYNTVTTNYHHPNIVTLTVFTLLD*FIKN*IHEWIKT-AQHTGNSATRI 210
+ + T+TT Y+ + L V+ + D N I WI+ QH +S +I
Sbjct: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKI 124
>At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871510 from [Pisum
sativum]; contains Pfam profile: PF00071 Ras family
Length = 218
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 356 QHYNTVTTNYHHPNIVTLTVFTLLD*FIKN*IHEWIKT-AQHTGNSATRI 210
+ + T+TT Y+ + L V+ + D N I W+K QH +S +I
Sbjct: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKI 124
>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
identical to IAA-amino acid hydrolase homolog ILL3
[Arabidopsis thaliana] gi|3420801|gb|AAC31939
Length = 428
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -3
Query: 229 VTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNT 116
+ +R + + LS+ F SGG FD++ ++++ T
Sbjct: 245 IISREVDPLLSHVLSVTFMKSGGSEFDVIPAYVEFGGT 282
>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA binding protein PufA
[Dictyostelium discoideum] gi|5106561|gb|AAD39751
Length = 524
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 171 LKKFMDKK--LSIKLNAGRAVTGVLR-GFDPFMNLVLDESVEECKDGQRNNV 317
L+KF+D+ + + + + V+ G DPF N ++ + +E C + QR +
Sbjct: 259 LQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQI 310
>At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 771
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +3
Query: 66 VGNSSNIQKSTTITLIPVL*YFKKHITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRG 245
V N+ N + T +IP+L +K I+ S++ P +++ LS L + V G +
Sbjct: 499 VNNNRNKELMLTSGVIPLL---EKMISCSQSQGPATALYLN--LSC-LEKAKPVIGSSQA 552
Query: 246 FDPFMNLVLDESVEECK 296
F+NL+L ++ +CK
Sbjct: 553 VSFFVNLLLQDTKTQCK 569
>At5g59840.1 68418.m07503 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 216
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 356 QHYNTVTTNYHHPNIVTLTVFTLLD*FIKN*IHEWIKT-AQHTGNSATRI 210
+ + T+TT Y+ + L V+ + D N I WI+ QH ++ +I
Sbjct: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI 124
>At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871508 from [Pisum
sativum]
Length = 216
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 356 QHYNTVTTNYHHPNIVTLTVFTLLD*FIKN*IHEWIKT-AQHTGNSATRI 210
+ + T+TT Y+ + L V+ + D N I W+K QH ++ +I
Sbjct: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKI 124
>At3g46060.1 68416.m04984 Ras-related protein (ARA-3) / small
GTP-binding protein, putative identical to SP|P28186
Ras-related protein ARA-3 {Arabidopsis thaliana};
contains Pfam profile: PF00071 Ras family
Length = 216
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 356 QHYNTVTTNYHHPNIVTLTVFTLLD*FIKN*IHEWIKT-AQHTGNSATRI 210
+ + T+TT Y+ + L V+ + D N I WI+ QH ++ +I
Sbjct: 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI 124
>At1g36550.1 68414.m04543 hypothetical protein weak similarity to
gag-pol polyprotein [Zea mays] GI:22296822
Length = 353
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +2
Query: 383 LEWARNITNAVNVLHFSSINKYKTRI*NLVSTATAATVKEKKRKTDNFISKLHYLNL 553
LEW +NI N+ H+ IN+ + A + + + R + + ++ L L
Sbjct: 105 LEWEKNIELVFNLQHYIEINRVRVAATEFYDYALSWNLTQGNRYVEEYYKEMETLML 161
>At3g08730.1 68416.m01015 serine/threonine protein kinase (PK1)
(PK6) identical to serine/threonine-protein kinase
AtPK1/AtPK6 (ribosomal-protein S6 kinase ATPK6)
[Arabidopsis thaliana] SWISS-PROT:P42818
Length = 465
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 320 DGGNSW*QYYNAGIFRQTLVDLEWARNITNAVNVLHFSSI 439
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 215 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 253
>At3g08720.2 68416.m01014 serine/threonine protein kinase (PK19)
identical to serine/threonine-protein kinase AtPK19
(Ribosomal-protein S6 kinase homolog) [Arabidopsis
thaliana] SWISS-PROT:Q39030
Length = 471
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 320 DGGNSW*QYYNAGIFRQTLVDLEWARNITNAVNVLHFSSI 439
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 221 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 259
>At3g08720.1 68416.m01013 serine/threonine protein kinase (PK19)
identical to serine/threonine-protein kinase AtPK19
(Ribosomal-protein S6 kinase homolog) [Arabidopsis
thaliana] SWISS-PROT:Q39030
Length = 471
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 320 DGGNSW*QYYNAGIFRQTLVDLEWARNITNAVNVLHFSSI 439
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 221 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 259
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 177 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD-ESVEECKDGQRNNVGMVVI 332
K M K+ ++KL GV+ + F+N++ D SVE+ KD + ++
Sbjct: 153 KAMKKRSTLKLLLELYYVGVIEDSNIFINIIKDLTSVEQLKDRDTTQTNLTLL 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,271,660
Number of Sequences: 28952
Number of extensions: 211453
Number of successful extensions: 574
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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