Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D21
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                49   3e-06
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              46   4e-05
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                41   8e-04
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)              41   8e-04
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               40   0.002
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)                35   0.050
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)                    35   0.067
SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)             33   0.15 
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)                   33   0.20 
SB_32949| Best HMM Match : SAP (HMM E-Value=1)                         33   0.20 
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_43575| Best HMM Match : Sina (HMM E-Value=0)                        31   0.62 
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)              30   1.9  
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)                  30   1.9  
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +2

Query: 323 GECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCPEH 451
           GECVICL+E   G T+  LPC   +H+ CI+ W   + + P H
Sbjct: 558 GECVICLDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAPHH 600


>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 317 SKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 445
           S   C ICL +   G++  ++PC  ++H GCI  W E   SCP
Sbjct: 58  STSSCPICLGDYEKGESTKQMPCDHLFHPGCILPWLEKTNSCP 100


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 308 LSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 445
           +++   +CVICLE    G  +  +PC   +HK C+D W   N +CP
Sbjct: 207 VTEKNPKCVICLEGFKNGQDLRIVPCRHEFHKECVDPWLLSNFTCP 252


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 329 CVICLEELSAGDTIARLPCLCIYHKGCIDQWF-EVNRSCP 445
           C ICL+E   GD +  LPC   YH  C+D W  E  R+CP
Sbjct: 301 CAICLDEYKEGDKLRILPCDHAYHCKCVDPWLTEGKRTCP 340


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 329 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFE-VNRSCP 445
           C+IC+EE + GD++  LPC   +H  CI  W    +  CP
Sbjct: 257 CLICMEEYAVGDSMKYLPCRHNFHSACIRTWLTYTSCKCP 296


>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
          Length = 545

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 317 SKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRS 439
           S G CV+C+ + +  + + +LPC   +H  CID+W +  R+
Sbjct: 357 SNGSCVVCMMDYTNREKLRKLPCNHDFHSKCIDRWLKAFRA 397


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 299 EDVLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFE 427
           E    +    CV+CL +      +  LPCL  YH  CID+W +
Sbjct: 283 ESKKQNDDARCVVCLVDFEEKQLVRTLPCLHEYHTRCIDKWLK 325


>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 329 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 445
           C +CL        + +L C  ++H+ CID W      CP
Sbjct: 212 CGVCLSAYHPLQYVRKLQCRHVFHRDCIDSWLATQSICP 250


>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
          Length = 398

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 329 CVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRSCP 445
           C ICLEE +       L C   Y + C+ +W E N +CP
Sbjct: 262 CPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTTCP 300


>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
          Length = 848

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 209 KCPVCSKFVLPDDIECHLVMCLTRPRLSYNEDVLSDSKG 325
           +CPVC K   P  I  H+  CL        E  L DSKG
Sbjct: 148 ECPVCGKSFSPKQINSHVEDCLKATENGEEERTLQDSKG 186


>SB_21610| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.32)
          Length = 425

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 203 GIKCPVCSKFVLPDDIECHLVMCL 274
           GIKCPVC +    D IE HLV C+
Sbjct: 400 GIKCPVCDEIFPHDQIEEHLVDCV 423


>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
          Length = 407

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 209 KCPVCSKFVLPDDIECHLVMCLTR 280
           +CPVC + +L   +  HL +CLTR
Sbjct: 64  ECPVCGELILQSKVNSHLDLCLTR 87


>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
          Length = 269

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 209 KCPVCSKFVLPDDIECHLVMCLTR 280
           +CPVC + +L   +  HL +CLTR
Sbjct: 142 ECPVCGELILQSKVNSHLDLCLTR 165


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 128  CFEMGQAFGTTNSHNGERNYARKEIGIKCPVCSK-FVLPDDIECHLV 265
            C   G++FG   S+N  +   +K++  +C  C K FV+P     HLV
Sbjct: 1066 CKLCGKSFGRLWSYNKHKQLHKKQLVYECAFCRKGFVIPSLYARHLV 1112


>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 209 KCPVCSKFVLPDDIEC---HLVMCLTRPRLS 292
           +CPVC  +VLP  ++C   HLV    RP+L+
Sbjct: 36  ECPVCFDYVLPPILQCSSGHLVCSNCRPKLT 66


>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 308 LSDSKGECVICLEELSAGDTIARLPC-LC--IYHKGCIDQWFEVNRSC 442
           L+     C +CL+ + A     RLPC LC  I+H  C+   +E++R C
Sbjct: 218 LNPGPTNCAVCLKGIRARQP--RLPCHLCEQIFHLKCLGAEYELSRCC 263


>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1951

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +2

Query: 275 TRPRLSY---NED-VLSDS-KGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEVNRS 439
           TR  + Y   +ED +LSD   G C++ L        I     LC  HK CI Q    N+ 
Sbjct: 215 TRDMIKYFPASEDGLLSDMLPGGCILVLNTADVQQHILPWTTLCALHKNCI-QPTGANKD 273

Query: 440 CP 445
           CP
Sbjct: 274 CP 275


>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
          Length = 537

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 353 TAPRGILHIRLSSRSEH-PHYKIDVASSGTLRDGTLCRPVKRTC 225
           T  RG+L+   S +S H P +K+    + T ++ ++C  V R C
Sbjct: 28  TRCRGVLYCSRSCQSIHWPKHKVTCKPTATCKNDSICDQVSREC 71


>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 164 NSSYRTLDPSQNNITALRSR-NNKCNKNKIDHTS 66
           N+S R  D ++NN ++ R+  NN  N NK DH+S
Sbjct: 24  NNSSRNNDKNRNNNSSSRNNDNNNNNDNKSDHSS 57


>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 350 LSAGDTIARLPCLCIYHKGCIDQWFEVNRSCPEH 451
           +S   +I+  PC+  +   C  QW E +R CP +
Sbjct: 70  MSDSFSISLQPCMHSFCASCYSQWMEHSRDCPSN 103


>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 287 LSYNEDVLSDSKGECVICLEELSAGDTIARLPCLCIYHKGCIDQWFEV 430
           +S N+D    +  +C +CL  LS         C+ ++   CI +W ++
Sbjct: 88  ISDNDDATMSNSAQCPVCLMSLSEQKLGTPNSCMHVFCLECILEWSKI 135


>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +2

Query: 197 EIGIKCPVCSKFVLPDDIECHLVMCLTRPRLSYNEDVLSDSKGECVICLEELSAGDTIAR 376
           E  ++CP+C +  L   IE H   C      S       +   +C IC++ L     IA 
Sbjct: 409 ECHVECPICGQLFLDYLIEEHASRCTDFAPCSPPHQSSPEELVDCPICIKRLPR-SAIAE 467

Query: 377 LPCLC 391
              LC
Sbjct: 468 HANLC 472


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 326  ECVICLEELSAGDTIARLPCLCIYHKGCIDQW 421
            EC++C++       I  L C C +   C+ Q+
Sbjct: 1004 ECIVCMDLKPENRMITMLNCQCRFCSDCVSQY 1035


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,547,977
Number of Sequences: 59808
Number of extensions: 368302
Number of successful extensions: 1108
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)