Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D19
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   3.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    26   5.4  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   5.4  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.2  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   9.5  
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    25   9.5  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/49 (22%), Positives = 28/49 (57%)
 Frame = +3

Query: 267 VINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQEKLTKLFKVDEESLV 413
           ++NL+   +++ F+N+ LV+ +  +N++    E   +  L  +DE  ++
Sbjct: 627 LLNLINDEKWQNFVNKTLVETRNRDNQLLGGLEPSMVGYLEDMDEGEML 675


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +3

Query: 243  PGLSKGIHVINLLELSRFEQFLNRI----LVK--LKMNNNEVFSQEEQEKLTKLFKVDEE 404
            PGLS+ + +IN  + SR   FLN      L+K  L + NN + + +  E    L ++D  
Sbjct: 2048 PGLSRRVMIINSNDPSRSRPFLNNNASEGLLKHPLLLRNNLIHTPKATELWENLAEIDNH 2107

Query: 405  S 407
            +
Sbjct: 2108 T 2108


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 593 RSFFTELIKYWPRFGRPYFNNNI 525
           RSF + L +YWP+F +P    +I
Sbjct: 233 RSFRSVLDRYWPKFIQPIVEGDI 255


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 285 LSRFEQFLNRILVKLKMNNNEVFSQEEQEKLTKLFKVDEES 407
           L  FEQ L+ I+V +     +  + E  +K+TKL ++ E+S
Sbjct: 58  LVHFEQTLHPIVVTIARQPKQKINDEPPQKITKL-EIREDS 97


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 297 EQFLNRILVKLKMNNNEVFSQEEQEKLTKLFKVDEESLV 413
           ++F N     L  +NN+    ++Q++L +LFK  +E LV
Sbjct: 335 DRFHNIEGFNLSDSNNQKVQDDQQQQLEELFKDLDEQLV 373


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 342 NEVFSQEEQEKLTKLFKVDEESL 410
           ++VF++ E  +L K+ K DEESL
Sbjct: 461 DDVFTEHESLELKKIGKNDEESL 483


>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 513 DEKADVIVKVWSSETRPILDQFS-KETSGMSQDD 611
           DEK DVI+K  + E R + +Q    ET+ +++ D
Sbjct: 86  DEKGDVILKYTADEARTLKNQGELPETAKINETD 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,975
Number of Sequences: 5004
Number of extensions: 41415
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)