Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D19
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)                  70   2e-12
SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34)                 33   0.20 
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            31   1.1  
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   1.9  
SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)             29   4.3  
SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06)                   28   5.7  
SB_2158| Best HMM Match : HCaRG (HMM E-Value=1.3e-37)                  28   7.6  

>SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)
          Length = 165

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 39/136 (28%), Positives = 69/136 (50%)
 Frame = +3

Query: 240 TPGLSKGIHVINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQEKLTKLFKVDEESLVMS 419
           T  L   + +IN ++ SRF   L RI+ KL + +   F+ EE+EKL   F +D++ L + 
Sbjct: 8   TAKLRTAVQLINNIDTSRFPLLLTRIVQKLHLRDENAFTAEEEEKLQVAFALDKDDLHIV 67

Query: 420 IXXXXXXXXXXXXFIFVPLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETSGM 599
           +                P  L+  L++L L D+K + IV+VW +  + ++D+  K +   
Sbjct: 68  LETCAFVFEQAAYHNAKPQGLQQQLQNLNLEDDKVNSIVEVWVASGKSLIDKLRKRSLAP 127

Query: 600 SQDDLNFTWKLNAELS 647
            Q D    W+LN +++
Sbjct: 128 VQLDC-VNWRLNLQMA 142


>SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 24/102 (23%), Positives = 41/102 (40%)
 Frame = +3

Query: 345 EVFSQEEQEKLTKLFKVDEESLVMSIXXXXXXXXXXXXFIFVPLTLRTDLKSLGLCDEKA 524
           E     + +KLT   K +   +   I            +     +L  +L+ LGL  E  
Sbjct: 44  ETIDYAKVQKLTSDAKFEVSDVKAVIAALCFILLSAAKYTVDSDSLGNELQQLGLPKEHC 103

Query: 525 DVIVKVWSSETRPILDQFSKETSGMSQDDLNFTWKLNAELSS 650
             + KV++    P+ D+F +ETS       N  W+++  L S
Sbjct: 104 GALCKVYAESLSPLQDRF-RETSLKFDGICNLEWRVDYVLGS 144


>SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34)
          Length = 196

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 24/102 (23%), Positives = 41/102 (40%)
 Frame = +3

Query: 345 EVFSQEEQEKLTKLFKVDEESLVMSIXXXXXXXXXXXXFIFVPLTLRTDLKSLGLCDEKA 524
           E     + +KLT   K +   +   I            +     +L  +L+ LGL  E  
Sbjct: 44  ETIDYAKVQKLTSDAKFEVSDVKAVIAALCFILLSAAKYTVDSDSLGNELQQLGLPKEHC 103

Query: 525 DVIVKVWSSETRPILDQFSKETSGMSQDDLNFTWKLNAELSS 650
             + KV++    P+ D+F +ETS       N  W+++  L S
Sbjct: 104 GALCKVYAESLSPLQDRF-RETSLKFDGICNLEWRVDYVLGS 144


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 261  IHVINLLELSRFEQFLNRILVKLKMNN--NEVFSQEEQEKLTKLFKVD 398
            +H  NL+E   FE+ +N +  ++K  N   E  S  + E LTKL K++
Sbjct: 1700 LHTANLMESESFERKMNELDERIKERNAVAEELSAHKAELLTKLNKLE 1747


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/34 (29%), Positives = 25/34 (73%)
 Frame = +3

Query: 516 EKADVIVKVWSSETRPILDQFSKETSGMSQDDLN 617
           +++DV V++ ++E +P+  + +K+  G S+DD++
Sbjct: 737 DESDVNVEITATEKKPVTPENTKDLKGKSRDDID 770


>SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 273 NLLELSRFEQFLNRILVKLKMNNNEVFSQEE--QEKLTKLFKVDEESL 410
           NLL L  F  F+  ++VK  +   E  S     + KL   FKVDEESL
Sbjct: 88  NLLLLRGFSTFIIFLMVKRNLWKREDASNMAVIETKLVSGFKVDEESL 135


>SB_11328| Best HMM Match : PAN (HMM E-Value=7.1e-06)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 553 SEDHTLTITSAFSSHNPRLFKSVLNVSGTKMNFNI 449
           + DH  TI +A  +HNP + +S+L  S  K  FNI
Sbjct: 181 NNDHPTTIVNAIITHNPPICQSLLFES--KPGFNI 213


>SB_2158| Best HMM Match : HCaRG (HMM E-Value=1.3e-37)
          Length = 201

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 471 PLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETSGMSQDDLNFTWKLNAELSS 650
           P  ++ D++ +GL +EKA  + + W      +      +T  ++Q  L+  WK     SS
Sbjct: 90  PAHVKEDIEKMGLSEEKATAVEQKWKVSLVGLSRSVVDQTFTVNQ-LLDMEWKFGVTASS 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,069
Number of Sequences: 59808
Number of extensions: 273028
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)