Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D19
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005179-1|AAH05179.1|  202|Homo sapiens COMM domain containing ...    70   6e-12
AY542165-1|AAS22247.1|  202|Homo sapiens COMMD10 protein.              70   6e-12
AK002147-1|BAA92108.1|  202|Homo sapiens protein ( Homo sapiens ...    70   6e-12

>BC005179-1|AAH05179.1|  202|Homo sapiens COMM domain containing 10
           protein.
          Length = 202

 Score = 70.1 bits (164), Expect = 6e-12
 Identities = 37/143 (25%), Positives = 72/143 (50%)
 Frame = +3

Query: 219 SATWIRITPGLSKGIHVINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQEKLTKLFKVD 398
           +A  +R +P + K + +IN ++  RF + L RIL KL +     FS+EE+EKL   F ++
Sbjct: 5   AALILRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLE 64

Query: 399 EESLVMSIXXXXXXXXXXXXFIFVPLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQF 578
           ++ L + +                P  L+  L+++ L  +KA+  V  WSS  +  +++F
Sbjct: 65  KQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKF 124

Query: 579 SKETSGMSQDDLNFTWKLNAELS 647
            +      + +    W+LN +++
Sbjct: 125 RQRILAPCKLE-TVGWQLNLQMA 146


>AY542165-1|AAS22247.1|  202|Homo sapiens COMMD10 protein.
          Length = 202

 Score = 70.1 bits (164), Expect = 6e-12
 Identities = 37/143 (25%), Positives = 72/143 (50%)
 Frame = +3

Query: 219 SATWIRITPGLSKGIHVINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQEKLTKLFKVD 398
           +A  +R +P + K + +IN ++  RF + L RIL KL +     FS+EE+EKL   F ++
Sbjct: 5   AALILRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLE 64

Query: 399 EESLVMSIXXXXXXXXXXXXFIFVPLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQF 578
           ++ L + +                P  L+  L+++ L  +KA+  V  WSS  +  +++F
Sbjct: 65  KQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKF 124

Query: 579 SKETSGMSQDDLNFTWKLNAELS 647
            +      + +    W+LN +++
Sbjct: 125 RQRILAPCKLE-TVGWQLNLQMA 146


>AK002147-1|BAA92108.1|  202|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11285 fis, clone PLACE1009571. ).
          Length = 202

 Score = 70.1 bits (164), Expect = 6e-12
 Identities = 37/143 (25%), Positives = 72/143 (50%)
 Frame = +3

Query: 219 SATWIRITPGLSKGIHVINLLELSRFEQFLNRILVKLKMNNNEVFSQEEQEKLTKLFKVD 398
           +A  +R +P + K + +IN ++  RF + L RIL KL +     FS+EE+EKL   F ++
Sbjct: 5   AALILRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLE 64

Query: 399 EESLVMSIXXXXXXXXXXXXFIFVPLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQF 578
           ++ L + +                P  L+  L+++ L  +KA+  V  WSS  +  +++F
Sbjct: 65  KQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKF 124

Query: 579 SKETSGMSQDDLNFTWKLNAELS 647
            +      + +    W+LN +++
Sbjct: 125 RQRILAPCKLE-TVGWQLNLQMA 146


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,036,908
Number of Sequences: 237096
Number of extensions: 1324367
Number of successful extensions: 1977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1977
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)