Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D19
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    29   2.2  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 465 FVPLTLRTDLKSLGLCDEKADVIVKVWSSETRPILDQFSKETSGMSQDDLNFTW 626
           F+ +++ T + SL        +I  VWS     ++  F +ET  ++ D +++TW
Sbjct: 107 FLTISMPTKVSSLFNYRNTCFIIAFVWSMAIGHVIPYFWRETCYVAYDPVSWTW 160


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 590 SFFTELIKYWPRFGRPYFNNNICLFITQSKTF 495
           +F T   + W RF R   N  +CLF+ +   F
Sbjct: 167 NFNTFFFQKWRRFSRHVTNFTVCLFLEEESIF 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,212
Number of Sequences: 27780
Number of extensions: 226513
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)