Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D18
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 262 1e-70
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 158 3e-39
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 150 9e-37
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 145 3e-35
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 132 2e-31
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 122 2e-28
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 112 2e-25
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 101 6e-22
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 101 6e-22
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 80 1e-15
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 64 1e-10
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 56 2e-08
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 56 2e-08
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 55 4e-08
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 55 4e-08
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 54 8e-08
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 53 2e-07
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 52 3e-07
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 49 3e-06
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 49 3e-06
At1g05940.1 68414.m00623 amino acid permease family protein low ... 32 0.38
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.2
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P... 29 2.7
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 3.6
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 4.7
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 28 6.2
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 28 6.2
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 28 6.2
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro... 27 8.2
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 262 bits (643), Expect = 1e-70
Identities = 129/188 (68%), Positives = 154/188 (81%)
Frame = +2
Query: 77 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 256
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 257 SNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHP 436
SNDGATIMKLLDI+HPAAK LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH
Sbjct: 62 SNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHA 121
Query: 437 RVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKI 616
+ LIR+ RTAS LAI K+KE AV I+ KS EE++ LL KCA+T +SSKLI +K+ F+ +
Sbjct: 122 QNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFATM 181
Query: 617 VVDAVLSL 640
VVDAV+++
Sbjct: 182 VVDAVMAI 189
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 158 bits (383), Expect = 3e-39
Identities = 81/173 (46%), Positives = 115/173 (66%)
Frame = +2
Query: 122 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 301
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 302 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 481
PAAK LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 482 EKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSL 640
+ I+E K+ K + + L+ CA T+MSSKLI D F+ +VV+AVLS+
Sbjct: 133 KYIEE---KLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSV 182
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 150 bits (363), Expect = 9e-37
Identities = 73/166 (43%), Positives = 114/166 (68%)
Frame = +2
Query: 152 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIA 331
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PAAK LV+++
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELS 91
Query: 332 KSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKI 511
KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI+ + AV +
Sbjct: 92 KSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPV 151
Query: 512 DNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTP 649
+ RD L+K AST+++SK++ Q + + VDAVLS+ P
Sbjct: 152 E----LTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDP 193
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 145 bits (351), Expect = 3e-35
Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Frame = +2
Query: 104 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHN-GKAV-ISNDGATI 277
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 278 MKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAV 457
+K L I +PAAK LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 458 RTASRLAIEKIKEQAVKIDNK-SPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVL 634
R AS A + ++ IDNK + E+ R LLK A T + SK++ Q K+HF+++ VDAV
Sbjct: 126 RMASECARNALLKRV--IDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVF 183
Query: 635 SL 640
L
Sbjct: 184 RL 185
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 132 bits (319), Expect = 2e-31
Identities = 69/189 (36%), Positives = 110/189 (58%)
Frame = +2
Query: 86 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 265
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 266 GATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVL 445
G I++ LD+ HPAAK++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+
Sbjct: 61 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVI 120
Query: 446 IRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVD 625
RA A +I + + A+ ID + L+ C T +S Q D + + +D
Sbjct: 121 CRAYIKALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKFTS----QFGDLIADLAID 176
Query: 626 AVLSLDTPL 652
A ++ L
Sbjct: 177 ATTTVGVDL 185
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 122 bits (295), Expect = 2e-28
Identities = 64/182 (35%), Positives = 116/182 (63%), Gaps = 2/182 (1%)
Frame = +2
Query: 101 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 274
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 275 IMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRA 454
I++ +D+ + AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP +
Sbjct: 73 ILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEG 132
Query: 455 VRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVL 634
ASR+A+E ++ A K + + L++ T +SSK++++ K ++I V AVL
Sbjct: 133 YEMASRVAVEHLERIAQKFE--FDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVL 190
Query: 635 SL 640
++
Sbjct: 191 AV 192
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 112 bits (270), Expect = 2e-25
Identities = 65/189 (34%), Positives = 108/189 (57%), Gaps = 4/189 (2%)
Frame = +2
Query: 86 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 256
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 257 SNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHP 436
+ND ATI+ L+I HPAAK LV AK+Q E+GDG + AGE+L+ + + G+HP
Sbjct: 66 TNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHP 125
Query: 437 RVLIRAVRTASRLAIEKIKEQAVKIDNKSPE-EQRDLLLKCASTAMSSKLIHQQKDHFSK 613
+I A A+E I EQ V+ +++ + +D ++ A++SK Q+ +
Sbjct: 126 SEIISGYTKAVSKAVE-ILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQE-EIICS 183
Query: 614 IVVDAVLSL 640
+V DA + +
Sbjct: 184 LVTDACIQV 192
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 101 bits (241), Expect = 6e-22
Identities = 54/164 (32%), Positives = 92/164 (56%)
Frame = +2
Query: 158 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKS 337
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 338 QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 517
QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPV-V 141
Query: 518 KSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTP 649
E +++L A T + +KL D + IVV++VL + P
Sbjct: 142 MGDEVDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKP 185
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 101 bits (241), Expect = 6e-22
Identities = 54/164 (32%), Positives = 92/164 (56%)
Frame = +2
Query: 158 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKS 337
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A + A +
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 338 QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 517
QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++ + +
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPV-V 141
Query: 518 KSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSLDTP 649
E +++L A T + +KL D + IVV++VL + P
Sbjct: 142 MGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKP 185
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 79.8 bits (188), Expect = 1e-15
Identities = 39/118 (33%), Positives = 75/118 (63%)
Frame = +2
Query: 287 LDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTA 466
+D+ + AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 467 SRLAIEKIKEQAVKIDNKSPEEQRDLLLKCASTAMSSKLIHQQKDHFSKIVVDAVLSL 640
SR+A+E ++ A K + + L++ T +SSK++++ K ++I V AVL++
Sbjct: 61 SRVAVEHLERIAQKFE--FDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAV 116
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 63.7 bits (148), Expect = 1e-10
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI---IHPAAKTLV-DIAKSQD 343
+ D V TLGPRG + +++D G + NDG TI + +++ + A L+ ++A +
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTN 126
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKS 523
GDGTT+ ILA EI+K V G +P L R + + IE+++++A
Sbjct: 127 DSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA------R 180
Query: 524 PEEQRDLLLKCAS-TAMSSKLIHQQ-KDHFSKIVVDAVLSLDT 646
P + RD + AS +A + LI D K+ D VLS+++
Sbjct: 181 PVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIES 223
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQD 343
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTN 133
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 517
GDGTT+ V+LA ++ V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 134 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKEVED 191
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK---LLDIIHPAAKTLV-DIAKSQD 343
+ DAV TLGPRG + ++ + + VI NDG TI K L D I A TL+ ++A +
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIELPDTIENAGATLIQEVAIKMN 113
Query: 344 AEVGDGTTSVVILAGEILK 400
GDGTT+ +ILA E++K
Sbjct: 114 ESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 343
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 517
GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 343
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 517
GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + ++++
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVED 195
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 54.0 bits (124), Expect = 8e-08
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP----AAKTLVDIAKSQD 343
+ D V TLGP+G + ++ G I NDG T+ + +++ P AK + A +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 133
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 517
GDGTT+ V+LA + V G +P ++ R + ++ + ++K + ++++
Sbjct: 134 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKEVED 191
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPA----AKTLVDIAKSQD 343
V +AV+ T+GP+G + +I G I+ DG T+ K + A A+ + +A + +
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATN 112
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKS 523
GDGTT +L IL V GV+ L + A + +K +AV I +
Sbjct: 113 KVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMI--ST 170
Query: 524 PEE 532
PEE
Sbjct: 171 PEE 173
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Frame = +2
Query: 173 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAE- 349
+V + TLGP+G + ++ + G I NDG T++K +++ P V + + A+
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKT 120
Query: 350 ---VGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDN 517
GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +I++
Sbjct: 121 NDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIED 179
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQD 343
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATN 112
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 502
GDGTT +L I V G++ L R + A + +K +A
Sbjct: 113 DVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKA 165
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +2
Query: 176 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD----IIHPAAKTLVDIAKSQD 343
+ DAV+ T+GP+G + +I G ++ DG T+ K ++ I + A + +A + +
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATN 113
Query: 344 AEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 502
GDGTT +L I V G++ L R ++ A + ++ +A
Sbjct: 114 DVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRA 166
>At1g05940.1 68414.m00623 amino acid permease family protein low
similarity to SP|P30823 High-affinity cationic amino
acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
Pfam profile PF00324: Amino acid permease
Length = 569
Score = 31.9 bits (69), Expect = 0.38
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 221 KLIVD-HNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEIL 397
+L++D H G A IS A+ L + PA K + + E+ G S+ ILA +L
Sbjct: 136 QLMLDYHIGAASISRSLASYAVALLELFPALKGSIPLWMGSGKELLGGLLSLNILAPILL 195
Query: 398 KRLKPFVEEGVHPRVLIRAVRTASRLAI 481
L + +GV + +V TA+++ I
Sbjct: 196 ALLTLVLCQGVRESSAVNSVMTATKVVI 223
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 101 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 223
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 939
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 227 IVDHNGKAVISNDGATIMKLLDIIHPAAKTLVDIAKSQDAEVGDGTTSVVILAGEI 394
+VD A I+++ AT++ + I T+VD+ DAE+ D T ++V + G+I
Sbjct: 480 VVDVQSDAEIADNTATVVDVQ--IADNTATVVDV--QSDAEIADNTATLVDVQGDI 531
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 395 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 535
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 463 CSDCSDQNTRVNTFFNKRLQPLQNFTGQYHYRGGSIANLGILRL-CN-IHKSFSG 305
C D + +N+F NK+ P + Q Y G + L +L CN HK F G
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVG 114
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +1
Query: 163 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 246
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +1
Query: 163 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 246
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +1
Query: 163 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 246
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 830
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 311 KTLVDIAKS--QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 475
K + IA S Q A G+T V L EIL + F E+GV P++ + +V + +L
Sbjct: 732 KRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYEKGV-PQITVESVESLIKL 787
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,859
Number of Sequences: 28952
Number of extensions: 295305
Number of successful extensions: 866
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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