Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D15
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 157 9e-40
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.6
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.6
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.6
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.6
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.2
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.9
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 6.6
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.8
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 8.8
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.8
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 25 8.8
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 8.8
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 157 bits (382), Expect = 9e-40
Identities = 77/140 (55%), Positives = 106/140 (75%), Gaps = 2/140 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 369 YNAILEDLVFPSEIVGKRIR 428
+NAILED+VFP+EI+GKR R
Sbjct: 124 HNAILEDIVFPTEIIGKRTR 143
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +1
Query: 439 DGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 147 DGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 412 TISEGKTKSSRIALYTEVNVLERGLFCLLATRVLW--LGLGRILRSPTKTTCLPLNFFSS 239
++SE + + I ++ ++V E G L + +W L +I+ K CL + F+
Sbjct: 82 SVSEDQINNDEIGIWNYISVAEMGGVLLFLSYWIWTCLHFSKIIFPAQKVICLYIFLFAL 141
Query: 238 SRT 230
++T
Sbjct: 142 NQT 144
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 412 TISEGKTKSSRIALYTEVNVLERGLFCLLATRVLW--LGLGRILRSPTKTTCLPLNFFSS 239
++SE + + I ++ ++V E G L + +W L +I+ K CL + F+
Sbjct: 82 SVSEDQINNDEIGIWNYISVAEMGGVLLFLSYWIWTCLHFSKIIFPAQKVICLYIFLFAL 141
Query: 238 SRT 230
++T
Sbjct: 142 NQT 144
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 412 TISEGKTKSSRIALYTEVNVLERGLFCLLATRVLW--LGLGRILRSPTKTTCLPLNFFSS 239
++SE + + I ++ ++V E G L + +W L +I+ K CL + F+
Sbjct: 54 SVSEDQINNDEIGIWNYISVAEMGGVLLFLSYWIWTCLHFSKIIFPAQKVICLYIFLFAL 113
Query: 238 SRT 230
++T
Sbjct: 114 NQT 116
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 412 TISEGKTKSSRIALYTEVNVLERGLFCLLATRVLW--LGLGRILRSPTKTTCLPLNFFSS 239
++SE + + I ++ ++V E G L + +W L +I+ K CL + F+
Sbjct: 82 SVSEDQINNDEIGIWNYISVAEMGGVLLFLSYWIWTCLHFSKIIFPAQKVICLYIFLFAL 141
Query: 238 SRT 230
++T
Sbjct: 142 NQT 144
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 307 LGLGRILRSPTKTTCLPLNFFSSSRTS 227
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 177 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 269
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 297 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPSEIVGKR 422
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 353 P*AWPLLFVSNTSFVAGLRQDLTVSN 276
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +1
Query: 427 GVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTG------REVTFEFPE 567
G+K DG + + +H K ++ + D + + ++TG RE + FPE
Sbjct: 303 GIKHDGIEGVAIHDQKEKELSSNLVSDVAKKIINEVTGHGYKEAREYSCSFPE 355
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 557 SKVTSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTPDALAYDLRREDQVLED 378
SK +S + W+ S L +++ W S CT SCE +A + RR VL
Sbjct: 343 SKEQQNKISGFSSIWR-SCLEPLIILWPRSLCTEESCEFHQYDINADTHAGRRHWDVLLA 401
Query: 377 SIV 369
+I+
Sbjct: 402 AIL 404
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 425 DALAYDLRREDQVLEDSIVHR 363
D L YDL+R + V+ D +H+
Sbjct: 214 DGLKYDLKRSEDVVYDLRIHK 234
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 485 VCWFLSKCTLMSCEPSNLTPDALAYDLRRE 396
+C FL K T SC NL D L Y ++E
Sbjct: 207 LCSFLPKSTYRSCRSDNL--DLLKYARKKE 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,331
Number of Sequences: 5004
Number of extensions: 50468
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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