Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D15
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 138 3e-33
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 123 1e-28
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 2e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.2
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.9
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.9
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.9
01_06_0143 - 26916490-26917719 29 3.9
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 6.8
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 9.0
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897 27 9.0
07_03_1594 + 28004256-28004287,28004399-28005290 27 9.0
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 138 bits (334), Expect = 3e-33
Identities = 72/140 (51%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 369 YNAILEDLVFPSEIVGKRIR 428
++ ILED+V+P+EIVGKRIR
Sbjct: 123 HDGILEDVVYPAEIVGKRIR 142
Score = 53.6 bits (123), Expect = 1e-07
Identities = 19/44 (43%), Positives = 35/44 (79%)
Frame = +1
Query: 433 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
+LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 144 RLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 123 bits (296), Expect = 1e-28
Identities = 65/122 (53%), Positives = 90/122 (73%), Gaps = 2/122 (1%)
Frame = +3
Query: 69 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 242
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 243 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPSEIVGKR 422
EKKFSGK VV V R+I+ P + V RPR+RTLT+V++ ILED+V+P+EIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 423 IR 428
+R
Sbjct: 154 VR 155
Score = 52.8 bits (121), Expect = 2e-07
Identities = 19/43 (44%), Positives = 33/43 (76%)
Frame = +1
Query: 436 LDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 158 LDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.5 bits (170), Expect = 2e-13
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = +3
Query: 123 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 302
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 303 PSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPSEIVG 416
P +K + PR+RTL +V++ ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 337 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 221
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +3
Query: 75 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 75 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 24 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 200
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 201 KAFQKI 218
+ +++
Sbjct: 359 DSSEEL 364
>01_06_0143 - 26916490-26917719
Length = 409
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 470 SKCTLMSCEPSNLTPDALAYDLRREDQVLEDSIVHRG 360
S + C+P++L+ AY RR+ +++D I HRG
Sbjct: 174 SASNIAFCQPASLSTSWTAY--RRDMDIIQDLIFHRG 208
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 75 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 209
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 347 AWPLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 195
AW L +S+++ ++ L +S KD+M +L FE D+P + F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212
>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
Length = 922
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 448 VSRPT*PLMRLPTI--SEGKTKSSRIALYTEVNVLERGLFCLLATRVLWLGLGRILRSPT 275
VS P PL R I + GK K+ + L+ + +LE + + VL G R+ R P
Sbjct: 487 VSNPFPPLKRFCKIVDASGKDKARHLELHRTLEILETAVDHMAEFVVLLGGCDRMSRRPY 546
Query: 274 KTTCLPLNF 248
T NF
Sbjct: 547 DTYLYIDNF 555
>07_03_1594 + 28004256-28004287,28004399-28005290
Length = 307
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 324 ANKQKRPRSRTLTSVYNAILEDLVFPSEI-VGKRIRGQVGRLTAH*GAL 467
ANK R RSR + ++++ L D +F S KR+ G+V +T G +
Sbjct: 6 ANKILRGRSRGVRPMFSSGLADRLFSSSASSSKRLEGKVAVITGAVGGI 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,469
Number of Sequences: 37544
Number of extensions: 330973
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -