Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D15
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   165   2e-41
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    29   3.5  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    29   3.5  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   6.1  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  165 bits (402), Expect = 2e-41
 Identities = 77/139 (55%), Positives = 107/139 (76%), Gaps = 1/139 (0%)
 Frame = +3

Query: 15  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 194
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 195 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 371
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 372 NAILEDLVFPSEIVGKRIR 428
           +A L++LV+P+E+VG+RIR
Sbjct: 127 DAWLDELVYPAEVVGRRIR 145



 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +1

Query: 430 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 570
           VKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VTFEFP+P
Sbjct: 146 VKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 79  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 189
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 479 WFLSKCTLMSCEPSNLTPDALAYDLRREDQVLEDS 375
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 72  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 106


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 479 WFLSKCTLMSCEPSNLTPDALAYDLRREDQVLEDS 375
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 84  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 118


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 430 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 561
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 430 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 561
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 101 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 15
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,082
Number of Sequences: 27780
Number of extensions: 286491
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)