Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D15
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 140 7e-34
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 140 7e-34
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 136 1e-32
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 129 1e-30
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 129 1e-30
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 3.3
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.3
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 5.7
At5g36905.1 68418.m04423 RNase H domain-containing protein low s... 27 10.0
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 27 10.0
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 10.0
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 140 bits (339), Expect = 7e-34
Identities = 72/140 (51%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 369 YNAILEDLVFPSEIVGKRIR 428
+ A+LED+ +P+EIVGKR R
Sbjct: 123 HEAMLEDVAYPAEIVGKRTR 142
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +1
Query: 433 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
+LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 140 bits (339), Expect = 7e-34
Identities = 72/140 (51%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 369 YNAILEDLVFPSEIVGKRIR 428
+ A+LED+ +P+EIVGKR R
Sbjct: 123 HEAMLEDVAYPAEIVGKRTR 142
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +1
Query: 433 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
+LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 136 bits (328), Expect = 1e-32
Identities = 73/140 (52%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 188
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 369 YNAILEDLVFPSEIVGKRIR 428
+ A+LED+ FP+EIVGKR R
Sbjct: 123 HEAMLEDVAFPAEIVGKRTR 142
Score = 54.4 bits (125), Expect = 6e-08
Identities = 21/44 (47%), Positives = 34/44 (77%)
Frame = +1
Query: 433 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
+LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 144 RLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 129 bits (312), Expect = 1e-30
Identities = 67/140 (47%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 369 YNAILEDLVFPSEIVGKRIR 428
+ AIL+D+V P+EIVGKR R
Sbjct: 123 HEAILDDVVLPAEIVGKRTR 142
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = +1
Query: 433 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
+LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 129 bits (312), Expect = 1e-30
Identities = 67/140 (47%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Frame = +3
Query: 15 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 188
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 189 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 368
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 369 YNAILEDLVFPSEIVGKRIR 428
+ AIL+D+V P+EIVGKR R
Sbjct: 123 HEAILDDVVLPAEIVGKRTR 142
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = +1
Query: 433 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 564
+LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 329 QTKEATLKDIDLCVQCYPRGLG 394
Q +E++LK CV+CYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 329 QTKEATLKDIDLCVQCYPRGLG 394
Q +E++LK CV+CYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 150 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 299
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g36905.1 68418.m04423 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 633
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 437 WTAHSSLRCT*TKTNRLLLNIKWTPSS 517
W AH +LR + + + ++IKWTP S
Sbjct: 430 WIAHLNLRRGAMRGSEVEMSIKWTPPS 456
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 27.1 bits (57), Expect = 10.0
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 TKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHNKKSIIIY 182
T +KA SF+ I + +EL T+ DL+ E EI EL K +
Sbjct: 554 TSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSKKVVDLTS 613
Query: 183 VPMPKLKAFQKIQIRLVRELEKKFSG 260
V + KA ++ L K +G
Sbjct: 614 VAQGEKKAVHDAKVELAAAYSKLLAG 639
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 82 NSKPTPTSKPNFGSF 126
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,428
Number of Sequences: 28952
Number of extensions: 269919
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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