Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D10
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7921| Best HMM Match : DUF842 (HMM E-Value=3.9e-07)                 59   4e-09
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        31   0.82 
SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)                 30   1.4  
SB_26975| Best HMM Match : ASC (HMM E-Value=5.5e-31)                   30   1.4  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               24   5.9  
SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017)                28   7.6  

>SB_7921| Best HMM Match : DUF842 (HMM E-Value=3.9e-07)
          Length = 251

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +2

Query: 95  MVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIENCTTP 274
           M  A + R++ E+   +  L++  LR +Q   H CA+KCCD+  +S   V  C+  C  P
Sbjct: 1   MAAAAEARVKSELEKTLESLEQHQLRPIQHKSHLCAAKCCDNQSASKASVQQCMTRCFQP 60

Query: 275 LNHANNYVQNEINHFQ 322
           L     +++ E+  FQ
Sbjct: 61  LQDIQKFMETELQRFQ 76


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 188 MHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDC 352
           + RCA KC D   +       C ++C T ++     ++    ++ N   +C+ DC
Sbjct: 520 IRRCAEKCPDGQYARDTLCQMCDQSCATCVDTGTKCLKCASGYYLNGTNQCLKDC 574


>SB_48397| Best HMM Match : TPR_2 (HMM E-Value=6.6e-26)
          Length = 598

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
 Frame = +2

Query: 173 KMQGDMHRCA---SKCCD--DTQSSLERVHGCIEN-CTTPLNHANNY-VQNEINHFQNRL 331
           K  GDMHR     SK  D  +T  SL +V+G  +  CT        Y   N++NH Q+  
Sbjct: 443 KQFGDMHRLKCDYSKALDYYETHLSLAKVNGLEDTQCTAYRLIGQCYWCLNQLNHSQHYY 502

Query: 332 QRCV-MDCN-DTARDRLGPDPSQETIDKCTIDFEK 430
           +RC+ + C      D L    S   I K    +EK
Sbjct: 503 ERCLELSCQLGNKEDGLEARHSLARIMKSLRQYEK 537


>SB_26975| Best HMM Match : ASC (HMM E-Value=5.5e-31)
          Length = 498

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +2

Query: 197 CASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDCNDTARDRL 376
           C S C  + Q ++    GC+E+     +     V N +N   + + RC++  N+TA D  
Sbjct: 300 CRSSCVANLQKTM---CGCVESAYAITDELRKIVCNALN---STVFRCIVKANETAEDSD 353

Query: 377 GPDPSQETIDKCTI 418
           G    +  + KC I
Sbjct: 354 G----KSCLTKCAI 363


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 23.8 bits (49), Expect(2) = 5.9
 Identities = 18/80 (22%), Positives = 30/80 (37%)
 Frame = +2

Query: 206  KCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDCNDTARDRLGPD 385
            KC     + L+ +H C  NC + L      V  +     +R   C   C +       P 
Sbjct: 1890 KCRTPCNAKLKCLHTCAGNCNSCLQQR---VHEQCKSKCDRTLFCGHSCQEPCTKNC-PP 1945

Query: 386  PSQETIDKCTIDFEKCAVKC 445
              ++  +KC  +  KC  +C
Sbjct: 1946 CQKQCENKC--EHSKCKNRC 1963



 Score = 22.6 bits (46), Expect(2) = 5.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 191  HRCASKCCDD 220
            H+CA+KC DD
Sbjct: 1850 HQCAAKCGDD 1859


>SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017)
          Length = 401

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +2

Query: 143 VNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHAN-----NYVQNE 307
           ++ L   YL + +   H C  KCC  T +  + V     +   P+NHA       Y  N+
Sbjct: 254 IDALSHPYLDEGRLRFHTCMCKCCQTTPAGRQYV-----SDFEPVNHARFDDSYEYNLND 308

Query: 308 INHFQNRLQRCVMD 349
           I+  +  L + V++
Sbjct: 309 ISSIKESLYKYVLE 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,971,883
Number of Sequences: 59808
Number of extensions: 408538
Number of successful extensions: 1513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)