Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D10
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    27   0.21 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.4  

>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 195 DVHPNAVTIHNPHWKGFMAA*KTVLHLSIMPIIMFRTRSIISRTGYRDALWIAMT 359
           +V P    + +PHW+ F A  K   H  I   I++    I+S  G    +WI  T
Sbjct: 33  NVPPEYSDLVHPHWRAFPAPGK---HFHIGLAIIYSMLLIMSLVGNCCVIWIFST 84


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 627 SLYEPDLIIVFMYWLLYREVI 565
           S Y P  ++VF Y+ +YR  +
Sbjct: 214 SFYLPLFVMVFTYYKIYRAAV 234


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 110 KYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIEN 262
           K   E+E T  +N  +  YL   +  M    +K C D+     ++   +EN
Sbjct: 160 KQNKEEEQT--INRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLEN 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,078
Number of Sequences: 438
Number of extensions: 4205
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)