Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D10
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43720.1 68415.m05435 expressed protein                             70   1e-12
At2g31725.1 68415.m03872 expressed protein                             58   4e-09
At1g05730.1 68414.m00597 expressed protein contains Pfam profile...    49   3e-06
At1g05740.1 68414.m00598 hypothetical protein contains Pfam PF05...    36   0.018
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    28   4.7  
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    28   4.7  
At1g64540.1 68414.m07316 F-box family protein contains F-box dom...    28   6.2  
At1g05890.1 68414.m00617 zinc finger protein-related contains lo...    28   6.2  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    27   8.2  

>At2g43720.1 68415.m05435 expressed protein
          Length = 147

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 35/110 (31%), Positives = 60/110 (54%)
 Frame = +2

Query: 176 MQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDCN 355
           +Q    +CA +C D T++  E +  C E+C+ P+ +A NY  NE++ FQ RL R ++ C 
Sbjct: 40  LQKAYFKCAYECFDRTRTHAE-ISRCAESCSVPITNAQNYFDNEMSVFQERLNRSLVVC- 97

Query: 356 DTARDRLGPDPSQETIDKCTIDFEKCAVKCVDKHMSLIPGMMKTMKKVLA 505
              +D+      Q+T  +   D E C  + VD+ +  +P ++  MKK L+
Sbjct: 98  ---QDKFEVAKQQKTRSEAVNDLEHCVNQTVDEAVKTLPNLVSRMKKALS 144


>At2g31725.1 68415.m03872 expressed protein
          Length = 149

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 27/106 (25%), Positives = 56/106 (52%)
 Frame = +2

Query: 176 MQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDCN 355
           +Q    +CA +C D  +   E +  C+E+C+ P+  +  Y +NE+  FQ RL R ++ C 
Sbjct: 42  LQQAYFKCAYECFDRRRKQ-EEISNCVEHCSVPVVKSQQYFENEMAQFQERLNRSLVVC- 99

Query: 356 DTARDRLGPDPSQETIDKCTIDFEKCAVKCVDKHMSLIPGMMKTMK 493
              +D+      Q+   +   + E C  K ++++++ +P +++ MK
Sbjct: 100 ---QDKFEASKLQKIRPEAVNEMESCVHKSIEENLNTLPHIVQRMK 142


>At1g05730.1 68414.m00597 expressed protein contains Pfam profile
           PF05811: Eukaryotic protein of unknown function (DUF842)
          Length = 149

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 24/106 (22%), Positives = 50/106 (47%)
 Frame = +2

Query: 176 MQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDCN 355
           +Q    +CA +C D  +   E +  C+E+C+ P+ +A  + + E++ FQ R+ R +M C 
Sbjct: 42  LQQAYFKCAYECFDRNRKQ-EEIANCVEHCSVPVVNAQQHFEGEMSQFQERMNRSLMVC- 99

Query: 356 DTARDRLGPDPSQETIDKCTIDFEKCAVKCVDKHMSLIPGMMKTMK 493
              +D+       +         E C    ++  +  +P +++ MK
Sbjct: 100 ---QDKFEAAKLHKNRGDAAKAMESCVNTSIEDSLDTLPHIVQRMK 142


>At1g05740.1 68414.m00598 hypothetical protein contains Pfam
           PF05811: Eukaryotic protein of unknown function (DUF842)
          Length = 145

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 173 KMQGDMHRCASKCCDDTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRLQRCVMDC 352
           ++Q    +C+++C +  +   E    C+E C  P+  +     +++  FQ+R+ R +M C
Sbjct: 52  ELQQAYFKCSNECFEKRRKP-EVTTNCVELCRVPVAKSQQQFDSDMAKFQDRMNRSLMVC 110

Query: 353 ND 358
            D
Sbjct: 111 QD 112


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 86   KLKMVEAQKYRIEQEMTNLVNE-LDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIEN 262
            KLK+ EA + R E+E+     E + R  LRK   D  R  ++    T+         I  
Sbjct: 1476 KLKVTEAARKRFEEELKRYATENVTREELRKSLEDQIRQLTQTVGQTKEEKREKEDQIAR 1535

Query: 263  CTTPLNHANNYVQ 301
            C   ++   + +Q
Sbjct: 1536 CEAYIDGMESKLQ 1548


>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 221 YRHSIWMHIYACHLAFFVNSYDLV 150
           ++H+ W H Y CH   F  S D +
Sbjct: 174 HQHNSWKHFYTCHQCEFFISLDCI 197


>At1g64540.1 68414.m07316 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 444

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
 Frame = +2

Query: 98  VEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHG--CIENCTT 271
           +E+ + +  Q +  L+N     +   ++G +HR  S+C D      ER  G  C+  C  
Sbjct: 322 LESDEEKGWQALPLLLNNSLNLHTLSIKGLVHRVTSRCGDACACISERKTGMCCLSACRI 381

Query: 272 PLNHANNYVQNEINHFQNRLQRCVMDCNDTARDRLGPDPSQETIDKCTIDFEKCAVKC 445
            +     Y  + I   Q R     + C +T R  +  D + E +        + + +C
Sbjct: 382 KVLEITGYGGSFIELKQMRHFLGKLQCLETVRIGVERDGNNEHLRANLSSLHRASSEC 439


>At1g05890.1 68414.m00617 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 552

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 218 DTQSSLERVHGCIENCTTPLNHANNYVQNEINHFQNRL 331
           + +S LER+H C+E        A      E NHF+ +L
Sbjct: 451 EAESGLERLHKCVEKDIEVFELAEG-PSEEFNHFRTKL 487


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1123

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +2

Query: 89  LKMVEAQKYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIENCT 268
           L+++   KY + Q++  +   LD S+LRK  G+      K C   Q+  E V    +   
Sbjct: 88  LEIMRCNKY-LGQQVIPVFYYLDPSHLRKQSGEFGEAFKKTC---QNQTEEVKNQWKQAL 143

Query: 269 TPLNHANNYVQNEIN 313
           T +++   Y     N
Sbjct: 144 TDVSNILGYHSKNCN 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,338
Number of Sequences: 28952
Number of extensions: 271187
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)