Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_D08
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 166 1e-41
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 165 2e-41
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 36 0.031
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 36 0.031
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 35 0.041
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 34 0.071
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 34 0.071
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.22
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 33 0.22
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 33 0.22
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 33 0.22
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.5
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 8.2
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 166 bits (403), Expect = 1e-41
Identities = 81/147 (55%), Positives = 100/147 (68%)
Frame = +2
Query: 212 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 391
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79
Query: 392 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 571
K A LFKIL KYRPE +P ++ G N VT L+E
Sbjct: 80 KNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE 138
Query: 572 KKKAQLVVIAHDVDPIELVLFLPALCR 652
+ KAQLVVIAHDVDPIELV++LPALCR
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCR 165
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 165 bits (402), Expect = 2e-41
Identities = 80/147 (54%), Positives = 100/147 (68%)
Frame = +2
Query: 212 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 391
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80
Query: 392 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 571
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 81 KNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE 139
Query: 572 KKKAQLVVIAHDVDPIELVLFLPALCR 652
+ KAQLVVIAHDVDPIELV++LPALCR
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCR 166
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 533 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 646
++ G N TK + + ++ VV+A D +P+E++L LP L
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLL 72
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 533 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 646
++ G N TK + + ++ VV+A D +P+E++L LP L
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLL 72
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 533 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 646
++ G N TK + + ++ +V+A D +P+E++L LP L
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLL 72
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 34.3 bits (75), Expect = 0.071
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 542 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 649
G + KL+EK+ AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 34.3 bits (75), Expect = 0.071
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 542 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 649
G + KL+EK+ AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 533 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 649
++ G V K + + + L VIA ++ PI+++ LP LC
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILC 89
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 542 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 649
G + KL+EK+ AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 542 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 649
G + KL+EK+ AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 542 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALC 649
G + KL+EK+ AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 538 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 380
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 499 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 404
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,498,295
Number of Sequences: 28952
Number of extensions: 204748
Number of successful extensions: 605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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