Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_D02
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 161   3e-40
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  129   2e-30
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              95   6e-20
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              91   7e-19
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               76   3e-14
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      65   5e-11
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   9e-11
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                56   2e-08
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            55   6e-08
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  29   3.3  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  161 bits (392), Expect = 3e-40
 Identities = 82/154 (53%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
 Frame = +2

Query: 197 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELS 376
           S+I AA+AVA  ++TSLGP+GMDKM+ + +GEVT+TNDGATIL  M V H  AK++VELS
Sbjct: 34  SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELS 93

Query: 377 RAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGIHPTVISDGFQKALQLALQVVENMST-- 550
           ++QD E GDGTT VVV+AGA L+ A +LL  GIHP  I+DG++ A ++AL+ +++++   
Sbjct: 94  KSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNF 153

Query: 551 PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIA 652
           PVD +N+++L++ A T+L SK+VS+    LA IA
Sbjct: 154 PVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIA 187


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score =  129 bits (312), Expect = 2e-30
 Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 5/173 (2%)
 Frame = +2

Query: 149 ILQXYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQA--ANGEVTITNDGATI 322
           IL    ++ +    RLS+   A A+ D ++++LGP+GMDK++Q+   NG + +TNDGATI
Sbjct: 8   ILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATI 67

Query: 323 LKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGIHPTVISDGF 502
           LK + + +PAAK+LVELS+ QD E GDGTTSV V+    L  A KL+   IHP  I  G+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127

Query: 503 QKALQLALQVVENMSTPVDLNNE---DALLKAAATSLNSKVVSQHSTILAPIA 652
           +K+++ A + +E  +     + E   + L+  A T+L+SK++ QH    A +A
Sbjct: 128 RKSVKAAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLA 180


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 43/54 (79%), Positives = 49/54 (90%)
 Frame = +2

Query: 161 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATI 322
           +KDK KP +IR++NI AAKAVADAIRTSLGP+GMDKMIQ  NG+VTITNDGATI
Sbjct: 16  FKDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 40/83 (48%), Positives = 62/83 (74%)
 Frame = +2

Query: 146 LILQXYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATIL 325
           ++L+   D S+     +SNI+A + +ADA+RT+LGPRGMDK+I    G+ TI+NDGATI+
Sbjct: 642 ILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATII 701

Query: 326 KQMSVIHPAAKMLVELSRAQDIE 394
             + ++HPAAK LV+++++QD E
Sbjct: 702 NLLDIVHPAAKTLVDIAKSQDAE 724


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 34/80 (42%), Positives = 54/80 (67%)
 Frame = +2

Query: 299 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGIH 478
           +TNDG  IL+++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  A   L + +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 479 PTVISDGFQKALQLALQVVE 538
           PT I   ++ A+   + +++
Sbjct: 61  PTQIIAAYRLAMDDMIDILK 80


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 38/118 (32%), Positives = 69/118 (58%)
 Frame = +2

Query: 296 TITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGI 475
           T+   G   ++   + HP A ++  ++ AQD   GDGTTS V+I G  L  A   + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216

Query: 476 HPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPI 649
           HP ++++GF+ A + AL+V+E +    ++ + D L+  A TSL +KV ++ + +L  +
Sbjct: 217 HPRLVTEGFEVAKKKALEVLEEVKVSREM-DRDTLINVAKTSLRTKVRTELADLLTEV 273


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
 Frame = +2

Query: 371 LSRAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGIHPTVISDGFQKALQLALQVVENMST 550
           LS+ QD E GDGTTSV V+A   L  A KL+   IHP  I  G++K+++ A + +E  + 
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61

Query: 551 PVDLNNE---DALLKAAATSLNSKVVSQHSTILAPIA 652
               + E   D L+  A T+L+SK++ QH    A +A
Sbjct: 62  DHSSDPEKFRDDLMNIARTTLSSKILVQHRDHFAKLA 98


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 28/70 (40%), Positives = 46/70 (65%)
 Frame = +2

Query: 329 QMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGIHPTVISDGFQK 508
           ++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  A   L + +HPT I   ++ 
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 509 ALQLALQVVE 538
           A+   + +++
Sbjct: 268 AMDDMIDILK 277


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
 Frame = +2

Query: 185 DIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV----IHPA 352
           + R + +     +ADA+  +LGP+G + +I+ + G   IT DG T+ K + +     +  
Sbjct: 67  EARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIG 126

Query: 353 AKMLVELSRAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGIHPTVIS 493
           A+++ +++   + EAGDGTT+  V+A +        + KG +P  +S
Sbjct: 127 ARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVS 173


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 21/65 (32%), Positives = 43/65 (66%)
 Frame = +2

Query: 233 IRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTT 412
           ++ S GP G+D M+++++G + ITN G+ IL+ +++ +P  +M+VE +R+     G G +
Sbjct: 16  LKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGAS 75

Query: 413 SVVVI 427
             ++I
Sbjct: 76  YFIII 80


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +2

Query: 350 AAKMLVELSRAQDIEAGDGTTSVVVIAGAXLDSAXKLLXKGIHPTVISDGFQKALQLALQ 529
           A++ML E+SR      GD +     ++G  L    KLL   +HP  I  G  K L   +Q
Sbjct: 238 ASQMLYEVSRL----LGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRLWEIVQ 293

Query: 530 VVENM 544
             E++
Sbjct: 294 EHEHL 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,041
Number of Sequences: 59808
Number of extensions: 316041
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)