Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_C23
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 90 3e-19
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 30 0.25
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 29 0.44
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 27 3.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.1
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 26 5.5
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.5
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 25 9.5
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 89.8 bits (213), Expect = 3e-19
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Frame = +2
Query: 194 LTLSKDYIWHRDVFKVFLPVYENKNLHNYPMHLINVTCFGDNIEDEWFIVYLVKNITKLY 373
L K++IW + + Y+ K+ ++ +T FGD I+DEW+IV+L++ +K
Sbjct: 52 LEYGKEHIWQNEELNLQRVEYQGKDC------ILGITNFGDCIDDEWYIVWLLREASKAV 105
Query: 374 TNIVVQIKDSDGEFLLIEAANYLPSWANSNTTENRVFIYNNNLHIIPPHVASIDE----- 538
+ V+I D DGEFLLIEAA LP W + + ++ RV+I+N + I+ P + +
Sbjct: 106 KSAFVRIIDEDGEFLLIEAALSLPKWIDEDNSDYRVWIHNGEVIILRPEDEFLKKMNRCP 165
Query: 539 KLEISEALKYLEINKDTKSTHEIENAISLRIEKFSK 646
L +A+ + + ++ E+ ++IS R++KF K
Sbjct: 166 PLTREQAIFQISSGSNLYTSREVNDSISQRLKKFPK 201
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 443 PSWANSNTTE---NRVFIYNNNLHIIPPHVASIDEKLEISEALKYLEINKDTKSTHEIEN 613
P+W+ S + + F+Y+ I+ HV ++ +K ISE L + +T E N
Sbjct: 717 PNWSRSKSAIILLSATFLYSLIAEILVEHVDTVLDKFAISEKFLGLTLFALVPNTTEFMN 776
Query: 614 AISLRIEK 637
AIS + +
Sbjct: 777 AISFALNE 784
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 29.5 bits (63), Expect = 0.44
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Frame = +2
Query: 248 PVYENKNLHNYPMHLINVTCFGDNIEDEWFIV----YLVKNIT--KLYTNIVVQIKDSDG 409
P+ +KN++ Y + F N+ E F Y V+++ ++Y I S
Sbjct: 362 PLPTDKNIYTYSQKTSSFVPFAGNLITELFFCSDSKYYVRHLVNQQVYPLIDCGYGPSGT 421
Query: 410 EFLLIEAANYLPSWANSNTTENRVFIYNNNLHIIPPHV 523
L E YL S +N+T N + I+N P +V
Sbjct: 422 SDGLCELQAYLNSPIRANSTSNGISIFNTECQARPTNV 459
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 173 DQINETILTLSKDYIW--HRDVFKVFLPVYENKNLHNYPMHLINVTCFGDNIEDEWFI 340
+ IN + SK++ + HR + K + VY +L +P+H T GD + W I
Sbjct: 205 EYINPSQEAQSKNFTFKCHRQIQKDYDIVYPVNDLKFHPIHQTLATAGGDGVVAFWDI 262
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 180 SMKQS*LCQKITSGIEMFSKSFYQFMRIKIYTTILC 287
SMK L Q+ G+E K F+ +M IY +++C
Sbjct: 1154 SMKNPSLYQRGILGLEWNGKRFWSYMLDGIYQSLVC 1189
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 542 LEISEALKYLEINKDTKSTHEIENAISLRIEKFSKHL 652
+E+ E + E N++ KST ++ +++ IE+F+KH+
Sbjct: 68 IELIEIMSVGE-NENFKSTKQLVDSLHADIEQFTKHV 103
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 128 KTCNIRYLRVMVQEKTAFLLKDI-SSIKYKFQMLITLNMKL 9
++CN + +R+++ E L KDI S++ + I LN+ +
Sbjct: 216 RSCNRQSMRLLLNECEPLLKKDILSNLPFSIVQSILLNLDI 256
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 134 LSLLERSQWVSLCDQINETILTLSKDYIWHRDVFKVFLPVYENKN 268
LSL + W S+ + + + LS+D WH D+ K+ ++ N
Sbjct: 19 LSLKKPGSWSSI---LLKAVGVLSRDSRWHSDLLKMLTEEMDSLN 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,779
Number of Sequences: 5004
Number of extensions: 57989
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -