Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_C23
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299... 91 9e-19
02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660... 30 1.9
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 29 2.4
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 28 7.5
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 27 9.9
04_04_0886 - 29089083-29089211,29089702-29089890,29089968-290901... 27 9.9
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 27 9.9
>08_02_0847 -
21828372-21828545,21829043-21829206,21829831-21829967,
21830909-21831241,21832067-21833244
Length = 661
Score = 90.6 bits (215), Expect = 9e-19
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 19/202 (9%)
Frame = +2
Query: 104 EDTVYCTFYSLSLLERSQWVSLCDQINETILTLSK-------DYIWHRDVFKVFLPVYEN 262
+DT++ YSL L L + L+LS +++HRD F + +P ++
Sbjct: 22 DDTLFYAVYSLPLPTALPPPDLHAALRSLHLSLSSHLAPFLASHLFHRDAFALTIPPPDH 81
Query: 263 KNLHNY-------PM-HLINVTCFGDNIEDEWFIVYLVKNITKLYTNIVVQIKDSDGEFL 418
+ P+ HL FGD++ DEW V L+ +T+ + ++ V+ DSDGEFL
Sbjct: 82 TAATSPCALCASPPVPHLHGALRFGDSLADEWLGVSLLFELTRAFPSLAVRAWDSDGEFL 141
Query: 419 LIEAANYLPSWANSNTTENRVFIYNNNLHIIPPHVASIDEKLEISEALKYLEINKDTKST 598
LIEAA LP W + +T NRVFI+ LHI+PP + L+ + A + + DT++
Sbjct: 142 LIEAAFALPRWLDPDTAPNRVFIFRGELHILPPSLFPGTPSLDAALAAVH-DDAVDTRAP 200
Query: 599 HEIENAISLRI----EKFSKHL 652
++ AI RI EK S++L
Sbjct: 201 DAVQAAIQRRIAGLPEKASENL 222
>02_05_0056 +
25461423-25461708,25461986-25462026,25466047-25466083,
25466451-25466594,25466882-25466974,25467067-25467155,
25467241-25467537,25467629-25467765,25467860-25467952,
25468061-25468166,25468243-25468395
Length = 491
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 182 NETILTLSKDYIWHRDVF--KVFLPVYENKNLHNYPMHLINVTCFGDNIEDEWFIVYLVK 355
+ET T DY W V +V+ V K N+ M NVT D+ E+F VY +
Sbjct: 238 DETDQTGMIDYAWDHAVISDRVYADV---KKYCNFSME--NVTDACDSALTEYFAVYRLI 292
Query: 356 NITKLYTNIVVQIKDS 403
++ LYT + ++ S
Sbjct: 293 DMYSLYTPVCTEVSSS 308
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 158 WVSLCDQINETILTLSKDYIWHRDVFKVFLPVYENKNLHNYPMHLINVTCFGDNIEDEWF 337
++ +C+++ ET L L KD+ +N L H++ G+ ED
Sbjct: 216 YLRICEEVKETRLKLFKDFFLEERKKLASTKAMDNNGLKCAIDHILEAQQKGEINEDN-- 273
Query: 338 IVYLVKNI 361
++Y+V+NI
Sbjct: 274 VLYIVENI 281
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 140 MIKNKTCNIRYLRVMVQEKTAF 75
M+ NKTC+I L+ VQEK F
Sbjct: 239 MLANKTCSINLLQEKVQEKGEF 260
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 422 IEAANYLPSWANSNTTENRVFIYNNNLHIIPPHVASIDEKLEISEAL-KYLEINK 583
+ + Y+ + + + T+ + Y+ + I+PP+ + D + +SE + K+L NK
Sbjct: 40 LHLSQYIETSCSYHNTKTLLHFYDPMVAIVPPNKTAADGMVGVSELVGKHLPTNK 94
>04_04_0886 -
29089083-29089211,29089702-29089890,29089968-29090121,
29090389-29090489,29090970-29091020,29092606-29092761
Length = 259
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 452 ANSNTTENRVFIYNNNLHIIPPHVASIDEKLEISE 556
+ ++TT N + +N+HI+ +VAS+ LEISE
Sbjct: 199 SRASTTSNESLNHPSNIHIVMKYVASL---LEISE 230
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 651 KCLENFSILNDIAFSISCVDLVSLLISKYFN 559
+CLE+ + N+ S+ V L+S+L +Y N
Sbjct: 244 RCLESLDLSNNRLTSLGSVKLISMLTLQYLN 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,355
Number of Sequences: 37544
Number of extensions: 286841
Number of successful extensions: 618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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