Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C23
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   3e-20
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)               30   1.9  
SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05)                  29   4.4  
SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)                      29   4.4  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  28   7.6  

>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 44/102 (43%), Positives = 63/102 (61%)
 Frame = +2

Query: 209 DYIWHRDVFKVFLPVYENKNLHNYPMHLINVTCFGDNIEDEWFIVYLVKNITKLYTNIVV 388
           DYIW    F +     E+      P  L+    FGD+++DEWFIVYL+  ++  Y ++ +
Sbjct: 109 DYIWQNQAFNLTSVKSES------PPCLMGRVDFGDSVDDEWFIVYLLTQLSIKYPDVCI 162

Query: 389 QIKDSDGEFLLIEAANYLPSWANSNTTENRVFIYNNNLHIIP 514
            + DSDGEFLLIEAA+ +P W    +++NRVFI   N+HIIP
Sbjct: 163 SVHDSDGEFLLIEAAHVIPKWLKPESSKNRVFIQGGNVHIIP 204


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +2

Query: 410  EFLLIEAANYLPSWANSNTTEN-RVFIYNNNLHIIPPHVASIDEKLEISEALKYLEINKD 586
            E  L   A  LPSWA     EN R+ + N  + + PP    I     +S   K   +NKD
Sbjct: 3647 ERFLWSTAPLLPSWALPQKGENQRMLVDNLGIEVAPPLEKVIKHLENLSLQFKG-NVNKD 3705

Query: 587  T-KSTHEIENAISLRIEKFSK 646
            T K   E+ + I   I  F K
Sbjct: 3706 TPKDQRELLHDIIYAILSFFK 3726


>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
          Length = 908

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 455 NSNTTENRVFIYNNNLHIIPPHVASIDEKLEISEALKYLEINKDTKSTHEIEN 613
           N     N   +  NN+HI+ PH+         S     LEI++ T S +++ N
Sbjct: 183 NGGKQRNTNIVEANNVHIVNPHLDCEGGLAHDSSICPSLEISEGTPSNNQLSN 235


>SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 75  KCSFFLNHYTKIPYIARFILYHCLKDHNGCHCVTK 179
           K  +F  HY+K PYIA +     ++++  C+   K
Sbjct: 229 KFDYFTEHYSKDPYIAEYQREEWMRNNGPCYSQLK 263


>SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)
          Length = 564

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 410 EFLLIEAANYLPSWANSNTTENRVFIYNNN 499
           EF+ +   NY  S +++N    RVFIYN N
Sbjct: 382 EFIDLGKCNYSQSCSDNNIDTVRVFIYNKN 411


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 521 VASIDEKLEISEALKYLEINKDTKSTHEIENAISLRI 631
           VAS  EKL++ E+ K+   N+   +++ +E A  LR+
Sbjct: 292 VASASEKLKLPESAKFKARNETPLTSNMVEGASGLRV 328


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +2

Query: 317  NIEDEW--FIVYLVKNITKLYTNIVVQIKDSDGEFLLIEAANYLPSWANSNTTENRVFIY 490
            ++  EW  F++  + ++    +  VV++ +  G  L  +   Y P W +  T ++++   
Sbjct: 1254 DLHHEWLQFVITCLPHMKGSLSTWVVRVTEQVGRMLEFQTTAYQPLWKHGKTGKDQI--- 1310

Query: 491  NNNLHIIPP-HVASIDEKL 544
              ++  +PP ++AS+ E +
Sbjct: 1311 -QSMPSLPPDYIASLLEHI 1328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,540,158
Number of Sequences: 59808
Number of extensions: 388497
Number of successful extensions: 974
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)