Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C23
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.84 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.6  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -3

Query: 627 LNDIAFSISCVDLVSLLISKYFNASDISNFSSILATCGGIICKLLL*MNTLFSVVFEFAH 448
           +  I FS + + L +L+    +N  + + +   L  C    C  +L    +FSVV   AH
Sbjct: 337 VTQIFFSYA-LGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAH 395

Query: 447 EGK*FAASINKNSPSLSLI 391
           E +   A +  + P L+ +
Sbjct: 396 EQQKPVADVAASGPGLAFL 414


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -3

Query: 627 LNDIAFSISCVDLVSLLISKYFNASDISNFSSILATCGGIICKLLL*MNTLFSVVFEFAH 448
           +  I FS + + L +L+    +N  + + +   L  C    C  +L    +FSVV   AH
Sbjct: 284 VTQIFFSYA-LGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAH 342

Query: 447 EGK*FAASINKNSPSLSLI 391
           E +   A +  + P L+ +
Sbjct: 343 EQQKPVADVAVSGPGLAFL 361


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 177 WSHNDTHCDLSSNDKE 130
           W H +TH D    D+E
Sbjct: 190 WEHKETHIDWQPEDEE 205


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 368 LYTNIVVQIKDSD 406
           LYTNIVV I++ D
Sbjct: 307 LYTNIVVDIRNED 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,965
Number of Sequences: 438
Number of extensions: 3997
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)