Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_C23
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65490.1 68418.m08236 expressed protein similar to unknown pr... 103 8e-23
At5g05850.1 68418.m00643 leucine-rich repeat family protein cont... 29 2.7
At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)... 29 3.6
At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: U... 29 3.6
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 28 4.7
At4g32800.1 68417.m04666 AP2 domain-containing transcription fac... 28 6.2
At2g14010.1 68415.m01557 hypothetical protein and genefinder 28 6.2
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ... 27 8.2
>At5g65490.1 68418.m08236 expressed protein similar to unknown
protein (dbj BAA75199.1)
Length = 643
Score = 103 bits (248), Expect = 8e-23
Identities = 55/182 (30%), Positives = 102/182 (56%), Gaps = 1/182 (0%)
Frame = +2
Query: 98 LHEDTVYCTFYSLSLLERSQWVSLCDQINETILTLSKDYIWHRDVFKVFLPVYENKNLHN 277
L ++TV+ + + S L + SL +I + + + YIW + F + + + + N
Sbjct: 17 LQDETVFFSLFPDSSLSSAALQSLHLEIIDFVSPFTSPYIWQHEPFSLSIALSSSCACTN 76
Query: 278 YPM-HLINVTCFGDNIEDEWFIVYLVKNITKLYTNIVVQIKDSDGEFLLIEAANYLPSWA 454
+ HL +GDN+EDEWF V+L+ I+ + + +++ D+DGEFLLIEAA +LP W
Sbjct: 77 TAIPHLHGKLKYGDNLEDEWFAVFLLFRISAAFPSNSIRVWDTDGEFLLIEAAFHLPRWL 136
Query: 455 NSNTTENRVFIYNNNLHIIPPHVASIDEKLEISEALKYLEINKDTKSTHEIENAISLRIE 634
N T+ NRVFI +LHI+P + + + ++ +E +++++ +++A+ RI
Sbjct: 137 NPETSLNRVFIRGGDLHIVPR--SRLPDPSLVASLRFLIERGNESRASDSVQSALKNRIS 194
Query: 635 KF 640
+
Sbjct: 195 DY 196
>At5g05850.1 68418.m00643 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeat domains;
similar to (SP:Q9UQ13) Leucine-rich repeat protein
SHOC-2 (Ras-binding protein Sur-8) (SP:Q9UQ13) {Homo
sapiens}
Length = 506
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 485 IYNNNLHIIPPHVASIDEKLEISEALKYLEINKDT 589
+YNN L IP +A + LE+ + +LE D+
Sbjct: 234 LYNNQLQAIPDSIAGLHNLLELDVSTNFLETLPDS 268
>At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)
Identical to the protein described in PMID:11156608 and
note that sequence was not deposited into GenBank by the
authors.
Length = 557
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 305 CFGDNIEDEWFIVYLVKNITKLYTNIVVQIKDSDGEFLLIEAAN 436
C GD + W V IT Y ++V++ DS GEF + N
Sbjct: 369 CAGDRSKISWTQVETGSAITWKYPSVVLEGDDSVGEFYSVALTN 412
>At1g35650.1 68414.m04431 Ulp1 protease family protein PF02902: Ulp1
protease family, C-terminal catalytic domain; similar to
At1g21020, At3g26530, At1g08760, At1g08740, At2g29240
Length = 736
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 95 PLHEDTVYCTFYSLSLLERSQWVSLCDQINETILTLSKDY--IWHRDVFK-VFLPVYE 259
P D VY F L++ WV LC ++ I+++ Y +W K V LP+ E
Sbjct: 597 PTGSDVVYIPF----LIDLQHWVGLCVDMSARIISVLDSYTGLWRETKLKNVLLPLAE 650
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 245 LPVYENKNLHNYPMHLINVT 304
LP+ EN NLH +P+ L +V+
Sbjct: 116 LPILENYNLHEHPLKLFDVS 135
>At4g32800.1 68417.m04666 AP2 domain-containing transcription factor
TINY, putative similar to transcription factor TINY -
Arabidopsis thaliana, PIR2:T01076
Length = 221
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 398 DSDGEFLLIEAAN---YLPSWANSNTTENRVFIYNNN 499
+ EF++ ++ Y+P W + TE VF YNNN
Sbjct: 170 NESNEFVIFDSLEDLVYMPRWLSG--TEEEVFTYNNN 204
>At2g14010.1 68415.m01557 hypothetical protein and genefinder
Length = 833
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 140 LLERSQWVSLCDQINETILTLSKDY--IWHRDVFK-VFLPVYE 259
L++ WV LC +N ++T+ Y +W K + LP+ E
Sbjct: 755 LVDSKHWVGLCLDVNSRVITVLDCYTGLWRETKLKNILLPLAE 797
>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 861
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 191 ILTLSKDYIWHRDVFKVFLPVYENKNLH 274
++ L +DYIW D + LP + + H
Sbjct: 194 VINLEEDYIWIHDYHLMVLPTFLRRRFH 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,837
Number of Sequences: 28952
Number of extensions: 270605
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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