Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C22
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648...    29   1.5  
04_01_0039 + 455760-457631                                             27   4.5  
03_06_0251 + 32654223-32654423,32655275-32655589                       27   4.5  

>12_02_1170 -
           26663491-26663602,26663999-26664104,26664613-26664816,
           26664914-26665076,26665196-26665317,26665702-26665969
          Length = 324

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 333 GNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 187
           GN+  FR   PC    +LG P S+     CT+Y     SR+ +     DQ
Sbjct: 211 GNMHRFRAIAPCAILDILGPPYSTEDGRDCTYYRAIPYSRHSVKNGAADQ 260


>04_01_0039 + 455760-457631
          Length = 623

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 329 IYLVSGLLLAY-KLHSWVVRPHHHIGTLVPS 240
           IY V+G L    KLH W+   H+H+G+++P+
Sbjct: 236 IYEVAGKLKKMGKLH-WLKLLHYHVGSMIPT 265


>03_06_0251 + 32654223-32654423,32655275-32655589
          Length = 171

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 276 PASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 187
           PAS PHRY C        +   MLQ+ P Q
Sbjct: 43  PASDPHRYACVQRVFGAGNTARMLQQLPVQ 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,003
Number of Sequences: 37544
Number of extensions: 171270
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)