Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_C22
(415 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60660.1 68416.m06787 expressed protein 29 1.6
At4g23810.1 68417.m03423 WRKY family transcription factor AR411 ... 27 3.8
At5g48990.1 68418.m06061 kelch repeat-containing F-box family pr... 27 5.0
At2g42490.1 68415.m05256 copper amine oxidase, putative similar ... 27 5.0
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr... 27 5.0
At1g10340.2 68414.m01165 ankyrin repeat family protein contains ... 27 5.0
At1g10340.1 68414.m01164 ankyrin repeat family protein contains ... 27 5.0
At2g42670.1 68415.m05281 expressed protein 27 6.6
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 26 8.7
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 26 8.7
>At3g60660.1 68416.m06787 expressed protein
Length = 272
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 267 SPHRYPCTFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKF 151
+P +P L+ C+LQE+ QY+Q +L KF
Sbjct: 94 APSHFPDKATMLNSDLNRCLLQENAKQYEQHSTLSSLKF 132
>At4g23810.1 68417.m03423 WRKY family transcription factor AR411 -
Arabidopsis thaliana (thale cress), PID:g1669603
Length = 324
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 258 RYPCTFY-CLHRSSRNCMLQEHPDQYQQDLSLLRQKFQG 145
++P ++Y C HRS++NC + + D ++ ++G
Sbjct: 175 KFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRG 213
>At5g48990.1 68418.m06061 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 372
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 158 KNFRDLVPXPVELAVQAIFSKPQPFIYAC 72
K FR ++ P + + KP+ F+Y C
Sbjct: 45 KTFRSILTSPELYKTRTLLGKPETFLYVC 73
>At2g42490.1 68415.m05256 copper amine oxidase, putative similar to
copper methylamine oxidase precursor (MAOXII)
[Arthrobacter sp.] SWISS-PROT:Q07123
Length = 776
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 347 EQTTQAIYLVSGLLLAYKLHSWVVRPHHHIG-TLVP 243
E++ ++ V G+ +L W V P HIG TL+P
Sbjct: 698 EESDVVLWYVFGITHVPRLEDWPVMPVEHIGFTLMP 733
>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 383
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 170 AC*GKNFRDLVPXPVELAVQAIFSKPQPFIYAC 72
+C K+F+ LV P ++++ K P +Y C
Sbjct: 50 SCVSKSFQSLVRSPELAHMRSLIGKDDPVVYVC 82
>At1g10340.2 68414.m01165 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 574
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 320 VSGLLLAYKLHSWVVRPHHHIGT--LVPSIVSI 228
V + AY SWV PH+H GT L P+IV++
Sbjct: 491 VGFMATAYIAASWVTIPHYH-GTQWLFPAIVAV 522
>At1g10340.1 68414.m01164 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 578
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 320 VSGLLLAYKLHSWVVRPHHHIGT--LVPSIVSI 228
V + AY SWV PH+H GT L P+IV++
Sbjct: 495 VGFMATAYIAASWVTIPHYH-GTQWLFPAIVAV 526
>At2g42670.1 68415.m05281 expressed protein
Length = 241
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 333 GNIFSFR-FTPCV*ASLLGRPASSPHRYPCTFY 238
GNI F+ T C +L P SS H CT++
Sbjct: 161 GNIHCFKAITHCAILDILAPPYSSEHDRHCTYF 193
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 246 TFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKF 151
T +CL R +N + + +Y L+LLR+K+
Sbjct: 579 TIFCLDRDGKNRAITINATEYIFKLALLRKKY 610
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 246 TFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKF 151
T +CL R +N + + +Y LSLLR+++
Sbjct: 579 TIFCLDRDGKNKAITINATEYIFKLSLLRKRY 610
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,727,603
Number of Sequences: 28952
Number of extensions: 139912
Number of successful extensions: 322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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