Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C21
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   4.1  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   7.2  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   7.2  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    25   9.5  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 435 IISFQRPLVIFSLSSPPVWLYH 370
           + +F +PLV FS+S  P+  YH
Sbjct: 844 LTNFTQPLVPFSVSRDPISFYH 865


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +2

Query: 347 KSYSTGYVWYNHTGGLDNEKITSGLWKEMISNLQEPCRTQAERLLCAY 490
           K+ ST    Y  + GL N    S LWKEM  NL         R + AY
Sbjct: 585 KTISTAVAGYITSQGLSNFGSDS-LWKEMSRNLSTELEDPYLRAIFAY 631


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = -2

Query: 566 LPYSLHNKVVRQSIRHRPY*CTSETHKHKAIFQLESCMV 450
           +PY+ H  V++ +I+H  + CT+ ++ +  + +LE   +
Sbjct: 75  IPYTYHATVMKAAIKHGKHVCTT-SYVNPKMAELEEAAI 112


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 120 TIIKSIRYRHNFIHCPPLYN 179
           TII S+ Y  NFI CP +++
Sbjct: 21  TIINSLVYLVNFISCPSIHS 40


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 321 VVHTMGKYVKVILPATYGTTTLADSTTR 404
           V  T+GK++ V +  T G TTL D   R
Sbjct: 131 VCKTLGKHMNVKVMVTTGGTTLRDDIIR 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,712
Number of Sequences: 5004
Number of extensions: 52455
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)