Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_C21
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 29 2.0
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 29 2.0
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 29 2.0
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 29 2.7
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 28 4.7
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 28 4.7
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 28 4.7
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 28 4.7
At2g15080.2 68415.m01719 disease resistance family protein conta... 28 4.7
At2g15080.1 68415.m01718 disease resistance family protein conta... 28 4.7
At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,... 27 8.2
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 277 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 194
LD + YD C L S S+ DLNH I
Sbjct: 202 LDNEALYDICFRTLKLSTPSFGDLNHLI 229
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 277 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 194
LD + YD C L S S+ DLNH I
Sbjct: 203 LDNEALYDICFRTLKLSTPSFGDLNHLI 230
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 277 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 194
LD + YD C L S S+ DLNH I
Sbjct: 203 LDNEALYDICFRTLKLSTPSFGDLNHLI 230
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 365 YVWYNHTGGLDNEKITSGLWKEMISNLQEPCRTQAERLL 481
+VW T LD+ KI S +EMI + + P ++Q R++
Sbjct: 292 FVWMGRTTSLDDRKIASKAAEEMIRSSERP-KSQMIRII 329
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 277 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 194
LD + YD C L + S+ DLNH I
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDLNHLI 229
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 277 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 194
LD + YD C L + S+ DLNH I
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDLNHLI 229
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 277 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 194
LD + YD C L + S+ DLNH I
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDLNHLI 229
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 277 LDEQVHYDYC*MVLDFSVTSYSDLNHNI 194
LD + YD C L + S+ DLNH I
Sbjct: 202 LDNEALYDICFRTLKLTTPSFGDLNHLI 229
>At2g15080.2 68415.m01719 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 983
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 235 LKPSNNNHNGPVHRAVNFAASLK 303
L+ NNN GP+HR+++ +LK
Sbjct: 406 LRLGNNNFRGPIHRSISKLVNLK 428
>At2g15080.1 68415.m01718 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 983
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 235 LKPSNNNHNGPVHRAVNFAASLK 303
L+ NNN GP+HR+++ +LK
Sbjct: 406 LRLGNNNFRGPIHRSISKLVNLK 428
>At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P49676 from [Brassica oleracea]
Length = 469
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 414 VAFGKK*SQISKNHAGLKLKDCFVLMRFRSASIRT-VSDTLPYHFVM 551
+ FGK + I++N+ G D VL+RF + + V + PY +VM
Sbjct: 297 LGFGKGKASINENYTGRYWPDPPVLLRFSTHLLHNWVLASSPYRYVM 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,559,402
Number of Sequences: 28952
Number of extensions: 267201
Number of successful extensions: 626
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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