Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C20
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)                    28   5.7  

>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 300  LSESQG-ISPALFARSLLQGVFSDSTISKKYIKDTTLIDNKDLAYQVFMG 446
            +SE +G   PAL++  + +   +++ I      DT L  N  L+Y++  G
Sbjct: 4769 ISEGKGEFVPALYSADISEATAAETAIINVTCSDTDLGPNSQLSYEIIRG 4818


>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
          Length = 465

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 228 ISSKYQELYEVAMRDDTKENVILKLSESQGISPALFARSLLQGVFSDSTISKKYIKDTTL 407
           ISSK + L  +  + D+ +       E Q +    +AR  L G+   S  S K I++TT 
Sbjct: 251 ISSKSERLEALKDKKDSADARTAAAIEVQRVWRGYYARCKLFGILHPSVSSMKTIEETTF 310

Query: 408 I 410
           +
Sbjct: 311 L 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,583
Number of Sequences: 59808
Number of extensions: 260146
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)