Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C20
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27670.1 68416.m03455 expressed protein                             30   1.2  
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE...    28   4.7  
At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR) domai...    27   8.2  

>At3g27670.1 68416.m03455 expressed protein
          Length = 1841

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -2

Query: 403 VVSLIYFFDIVESENTPCSNDLAKSAGLIP*LS 305
           +++++YF +++   N PC + L+K  GL+P L+
Sbjct: 522 LLAVLYFSNLLSRTNVPCQSLLSKLLGLLPSLA 554


>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 666

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 276 TKENVILKLSESQGISPALFARSLLQGVFSDSTISKKYI 392
           TKENVI+ LS+  G SP L+ ++    VF  S +SK+ +
Sbjct: 95  TKENVIMFLSDMSGKSP-LYKKAF---VFFSSPVSKELV 129


>At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 241

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 49  KIEEYNAIVEDFTKLSSFTRKMENELKRKYCHIQPHTLXEYHIIINTKI 195
           KIEE N  V  F+K  + +    NEL++ Y H++   L    +  +  I
Sbjct: 59  KIEESNIAVVIFSKRYTESEMCLNELQKMYEHVEQSNLKVIPVFYDVSI 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,466
Number of Sequences: 28952
Number of extensions: 185049
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)