BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P05_F_C09 (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 31 0.19 SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.58 SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 29 0.77 SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 1.3 SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.3 SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 2.3 SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 3.1 SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 4.1 SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 26 4.1 SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 5.4 SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 5.4 SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 5.4 SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 25 7.2 SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 7.2 SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 9.5 >SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 1254 Score = 30.7 bits (66), Expect = 0.19 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +2 Query: 413 YEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGK 556 Y+A +QS L NG++ K ++ + + G+ F L PFGK Sbjct: 657 YDASQQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGK 704 >SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schizosaccharomyces pombe|chr 2|||Manual Length = 451 Score = 29.1 bits (62), Expect = 0.58 Identities = 25/93 (26%), Positives = 40/93 (43%) Frame = +2 Query: 260 KKMPKIPYKPEKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKY 439 +K+ K PEK+ + + S D SD S ND+ + E++ S Sbjct: 84 QKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSS-- 141 Query: 440 LENNGESSKGIDSHTETSLNGARNGSFRKLSNS 538 E++ SS DS +E+S G+ + S S S Sbjct: 142 -EDSDSSSSSSDSESESSSEGSDSSSSSSSSES 173 >SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 727 Score = 28.7 bits (61), Expect = 0.77 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +2 Query: 332 FDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGIDSHT 484 + +F D+SP S T N ++ ++ K S L+ +SS+ +DSHT Sbjct: 94 YTNFDDESPSSPTHPSVSNITVDG----DSKKHSLQLQEEEKSSESLDSHT 140 >SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosaccharomyces pombe|chr mitochondrial||Partial|Manual Length = 323 Score = 27.9 bits (59), Expect = 1.3 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Frame = +2 Query: 341 FSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYL----ENNGESSKGIDSHTETSLNGAR 508 FSD + +L + I RL Y+ D++ +YL ++N + G +T G+ Sbjct: 204 FSDADASFQIKILNRDKKIEVRLNYQIDQKKEYLLSLIKDNLGGNIGYRKSQDTYYYGST 263 Query: 509 N-GSFRKLSNSF 541 + GS +K+ N F Sbjct: 264 SFGSAKKVINYF 275 >SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 27.9 bits (59), Expect = 1.3 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Frame = +2 Query: 338 DFSDKSPGSKTDLLTLNDNINYRLYY----EADKQSKYLENNGESSKGIDSHTETSLNGA 505 DFS S SK + L IN+R + E+D Q++YL+ + ETSL+ + Sbjct: 56 DFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSLSPS 115 Query: 506 R---NGSFRKLSN 535 + + + RKL N Sbjct: 116 KSTIDNNERKLDN 128 >SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated membrane proteins, ESCRT 0 complex|Schizosaccharomyces pombe|chr 1|||Manual Length = 610 Score = 27.1 bits (57), Expect = 2.3 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +2 Query: 341 FSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGID 475 FSD + G K L ++++ N YY D K E E S G D Sbjct: 545 FSDTASGEKNTKLNIDESTN---YYNTDSIDKVGEPFDEISSGYD 586 >SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 345 Score = 26.6 bits (56), Expect = 3.1 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -3 Query: 470 YLWMILHCFLDILIVYLLRNR 408 YLWM+L+C + V +R R Sbjct: 166 YLWMVLNCLTNAAFVLAMRKR 186 >SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 26.2 bits (55), Expect = 4.1 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = +2 Query: 284 KPEKSGGNDD----DYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENN 451 KPE +DD D+ DD D G + LL LN+ Y+L+Y K + E++ Sbjct: 153 KPETVPPDDDPEKPDWIHFEQDDHVDVICGKEAFLLPLNEYPEYKLFYPI-KSGVFNESD 211 Query: 452 GESSK 466 SS+ Sbjct: 212 YASSQ 216 >SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 369 Score = 26.2 bits (55), Expect = 4.1 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = -1 Query: 340 IIERNNFVVIVISTRLFWFIWYFRHFL*SKYTVSFIDRFSE 218 ++E ++F+V+V +W +W F L +K + ++ F E Sbjct: 232 VVENDSFIVVVP----YWALWPFETLLIAKEHLKSLEEFEE 268 >SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 699 Score = 25.8 bits (54), Expect = 5.4 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +2 Query: 443 ENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTH 574 ++ GES+K D++T TS + R K + + KSG K H Sbjct: 294 QDTGESNK--DNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDH 335 >SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces pombe|chr 2|||Manual Length = 2493 Score = 25.8 bits (54), Expect = 5.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 83 IVASLCDNSVPIVVGACVINLKKKPSIIQRKNIEKP 190 I+ S+ DNSVP+ V ++L I+R I P Sbjct: 426 ILESVLDNSVPVPVDVASVSLNHFVYCIERLQIVSP 461 >SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 25.8 bits (54), Expect = 5.4 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -1 Query: 289 WFIWYFRHFL*SKYTVSFIDRFSEMAVNGSLLYWFFYIF 173 WF ++F + +K V F+D + + NG + F IF Sbjct: 499 WFTYFFEYSGPNKALVGFLDAITLVMENGFAIGAFISIF 537 >SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|Schizosaccharomyces pombe|chr 1|||Manual Length = 161 Score = 25.4 bits (53), Expect = 7.2 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +3 Query: 444 KTMENHPKVLTVIQKRR*MEQEMDHSENYQILLSHSENPAGRLTRR 581 KT+ +PKVL + +R + +E+ ++ QIL S+ RL ++ Sbjct: 117 KTLSRYPKVLEQVDMKR-VNEELSKLQDKQIL--ESQQKIARLLKK 159 >SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1|||Manual Length = 469 Score = 25.4 bits (53), Expect = 7.2 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -2 Query: 108 LLSHND-ATIYEPSKHLCLFYLLFSNXDQSKIKLRI 4 L HN +TI +P H C+F++ + S ++LR+ Sbjct: 193 LEKHNPRSTIQDPRVHACIFFIQPTGHAISAMELRV 228 >SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 652 Score = 25.0 bits (52), Expect = 9.5 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 576 RRYLAALSLRMKMNLHLENTDIXGF 650 R YL + K N+HL++TDI GF Sbjct: 522 REYLLEEAFERK-NVHLKSTDIRGF 545 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,537,206 Number of Sequences: 5004 Number of extensions: 53320 Number of successful extensions: 194 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 194 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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