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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C09
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    31   0.19 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    29   0.58 
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    29   0.77 
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.3  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   2.3  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   3.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   4.1  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    26   4.1  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   5.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.4  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   5.4  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    25   7.2  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.5  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 413 YEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGK 556
           Y+A +QS  L  NG++ K ++  + +   G+    F  L     PFGK
Sbjct: 657 YDASQQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGK 704


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 25/93 (26%), Positives = 40/93 (43%)
 Frame = +2

Query: 260 KKMPKIPYKPEKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKY 439
           +K+ K    PEK+  + +     S  D SD S          ND+ +     E++  S  
Sbjct: 84  QKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSS-- 141

Query: 440 LENNGESSKGIDSHTETSLNGARNGSFRKLSNS 538
            E++  SS   DS +E+S  G+ + S    S S
Sbjct: 142 -EDSDSSSSSSDSESESSSEGSDSSSSSSSSES 173


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 332 FDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGIDSHT 484
           + +F D+SP S T     N  ++     ++ K S  L+   +SS+ +DSHT
Sbjct: 94  YTNFDDESPSSPTHPSVSNITVDG----DSKKHSLQLQEEEKSSESLDSHT 140


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +2

Query: 341 FSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYL----ENNGESSKGIDSHTETSLNGAR 508
           FSD     +  +L  +  I  RL Y+ D++ +YL    ++N   + G     +T   G+ 
Sbjct: 204 FSDADASFQIKILNRDKKIEVRLNYQIDQKKEYLLSLIKDNLGGNIGYRKSQDTYYYGST 263

Query: 509 N-GSFRKLSNSF 541
           + GS +K+ N F
Sbjct: 264 SFGSAKKVINYF 275


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
 Frame = +2

Query: 338 DFSDKSPGSKTDLLTLNDNINYRLYY----EADKQSKYLENNGESSKGIDSHTETSLNGA 505
           DFS  S  SK + L     IN+R +     E+D Q++YL+           + ETSL+ +
Sbjct: 56  DFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSLSPS 115

Query: 506 R---NGSFRKLSN 535
           +   + + RKL N
Sbjct: 116 KSTIDNNERKLDN 128


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 341 FSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGID 475
           FSD + G K   L ++++ N   YY  D   K  E   E S G D
Sbjct: 545 FSDTASGEKNTKLNIDESTN---YYNTDSIDKVGEPFDEISSGYD 586


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 470 YLWMILHCFLDILIVYLLRNR 408
           YLWM+L+C  +   V  +R R
Sbjct: 166 YLWMVLNCLTNAAFVLAMRKR 186


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 284 KPEKSGGNDD----DYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENN 451
           KPE    +DD    D+     DD  D   G +  LL LN+   Y+L+Y   K   + E++
Sbjct: 153 KPETVPPDDDPEKPDWIHFEQDDHVDVICGKEAFLLPLNEYPEYKLFYPI-KSGVFNESD 211

Query: 452 GESSK 466
             SS+
Sbjct: 212 YASSQ 216


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 340 IIERNNFVVIVISTRLFWFIWYFRHFL*SKYTVSFIDRFSE 218
           ++E ++F+V+V     +W +W F   L +K  +  ++ F E
Sbjct: 232 VVENDSFIVVVP----YWALWPFETLLIAKEHLKSLEEFEE 268


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 443 ENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTH 574
           ++ GES+K  D++T TS +  R     K   + +   KSG K H
Sbjct: 294 QDTGESNK--DNNTSTSKHKKRPKRLSKFKQAKLETKKSGNKDH 335


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 83  IVASLCDNSVPIVVGACVINLKKKPSIIQRKNIEKP 190
           I+ S+ DNSVP+ V    ++L      I+R  I  P
Sbjct: 426 ILESVLDNSVPVPVDVASVSLNHFVYCIERLQIVSP 461


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 289 WFIWYFRHFL*SKYTVSFIDRFSEMAVNGSLLYWFFYIF 173
           WF ++F +   +K  V F+D  + +  NG  +  F  IF
Sbjct: 499 WFTYFFEYSGPNKALVGFLDAITLVMENGFAIGAFISIF 537


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 444 KTMENHPKVLTVIQKRR*MEQEMDHSENYQILLSHSENPAGRLTRR 581
           KT+  +PKVL  +  +R + +E+   ++ QIL   S+    RL ++
Sbjct: 117 KTLSRYPKVLEQVDMKR-VNEELSKLQDKQIL--ESQQKIARLLKK 159


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 108 LLSHND-ATIYEPSKHLCLFYLLFSNXDQSKIKLRI 4
           L  HN  +TI +P  H C+F++  +    S ++LR+
Sbjct: 193 LEKHNPRSTIQDPRVHACIFFIQPTGHAISAMELRV 228


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 RRYLAALSLRMKMNLHLENTDIXGF 650
           R YL   +   K N+HL++TDI GF
Sbjct: 522 REYLLEEAFERK-NVHLKSTDIRGF 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,206
Number of Sequences: 5004
Number of extensions: 53320
Number of successful extensions: 194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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