Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C09
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0294 + 1968162-1968212,1969379-1969484,1969785-1969970,197...    29   2.4  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    29   3.2  
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    29   4.2  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    28   5.6  
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    28   5.6  
12_02_1268 + 27458823-27460046                                         28   7.4  
12_02_1097 - 26059963-26061093                                         27   9.8  

>02_01_0294 +
           1968162-1968212,1969379-1969484,1969785-1969970,
           1970562-1971011,1971121-1971204,1971378-1971445
          Length = 314

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -2

Query: 636 LCSLDEDSFSFLDLTPLNNGV*VFPPDFPNGTKEFDNFLNDPFLAPFSDVSV*LSIPLDD 457
           +  +D  SF FL   P N        DF    +  +N+   PF+ P    +   S P D 
Sbjct: 233 IMDMDSSSFGFLSQIPRNFSFSDLTEDFSQSAEILENYGRSPFI-PSEPNNFSESTPGDH 291

Query: 456 SPLFSRYFDCLS 421
           + + +R  D +S
Sbjct: 292 AEIGNRRLDTIS 303


>03_05_0697 +
           26888791-26888861,26890468-26890579,26891561-26891757,
           26892215-26892266,26893530-26893795,26894007-26894229,
           26895154-26895327,26895408-26895485,26895566-26895817,
           26896138-26898204,26899477-26901322,26901474-26901574,
           26902179-26902535,26902681-26902799,26903558-26903559,
           26903630-26903662,26903709-26903841,26904285-26904537,
           26905688-26905912,26906401-26906466,26907373-26907471,
           26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 392 NINYRLYYEADKQSKYLENNGESSKGIDSHTE 487
           N+N  + Y    QS +L  N  +SKGI  HTE
Sbjct: 467 NLNGLVLYHICSQSSHLYANNIASKGIQIHTE 498


>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
            29283735-29283917,29284362-29284467,29284627-29284651,
            29284736-29284855,29284920-29284997,29285646-29285774,
            29285976-29285989,29286168-29287944,29288344-29288489,
            29288921-29291029
          Length = 1747

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 636  LCSLDEDSFSFLDLTPLNNGV*VFPPDFPNGTKEFDNFLNDPFL 505
            +  ++  SF FL   P  N     P DF   T+  DN+   PFL
Sbjct: 1688 ILDIESSSFGFLSQLP-RNFFSDLPEDFSQSTEILDNYGKSPFL 1730


>03_02_0901 +
           12267042-12267182,12267949-12268095,12268163-12268253,
           12268367-12268485,12268779-12268969,12269440-12269650,
           12270072-12270309,12270944-12271329,12271933-12271956,
           12271984-12272077,12272341-12272525,12273025-12273255,
           12273665-12273730,12273816-12274034,12274764-12275003,
           12275244-12275423,12276269-12276535,12276612-12276815,
           12276896-12277048
          Length = 1128

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = +2

Query: 272 KIPYKPEKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLN---DNINYRLYYEADKQSKYL 442
           K   + ++   ND D E V   DF D   G + D  T     +  N   Y++  K+   +
Sbjct: 657 KAALRGQEINENDVDDEEVD-GDFEDLETGEEVDNDTKKSKREETNGGGYFDKLKEEIEI 715

Query: 443 ENNGESSK--GIDSHTETSLNGARNGSFRKLSNSFVPF 550
                 S+   +D  T   + G R GS+ +L    VPF
Sbjct: 716 RKQMNISELNDLDEDTRVEIEGFRTGSYIRLEVHGVPF 753


>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 395 INYRLYYEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKT 571
           +N+++ +        +EN  ESS   ++  E  L  +  G F+  S       + GGKT
Sbjct: 19  LNWKIEWNPLSFEAKMENGLESSVSFEAKLENRLESSNPGQFKVYSGGLAWKRQGGGKT 77


>12_02_1268 + 27458823-27460046
          Length = 407

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 296 SGGNDDDYEIVSFDDFSDKSPGS-KTDLLTLNDNINYRL 409
           +GGNDDD E  S  D SD S  S + D L +   +++ L
Sbjct: 362 AGGNDDDDESSSSSDDSDSSSDSEEQDKLAVVTKLDFSL 400


>12_02_1097 - 26059963-26061093
          Length = 376

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 266 MPKIPYKPEKSGGNDDDYEIVSFDD 340
           +PK+P   E    +D DY+I+  DD
Sbjct: 269 VPKLPMGKEYVDASDGDYDIIKLDD 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,482
Number of Sequences: 37544
Number of extensions: 278640
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)