Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C09
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41599| Best HMM Match : PRP1_N (HMM E-Value=4.3)                    29   3.3  
SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   5.7  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   5.7  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.7  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_39073| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   7.6  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    28   7.6  
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   7.6  

>SB_41599| Best HMM Match : PRP1_N (HMM E-Value=4.3)
          Length = 278

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 302 GNDDDYEIVSFD-DFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKGIDS 478
           G +DD E++  D DFS+        + + +D   Y      DK+   L+N    + G  +
Sbjct: 130 GTEDDSELMYADIDFSNAKNKDNNKIPSNDDKTLYADITSFDKKGNTLKNGDAPTNGQST 189

Query: 479 HTETSLNGARNGS 517
           + +TS    +  S
Sbjct: 190 NRQTSSTNGQTSS 202


>SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 487

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 YKPEKSGGNDDDYEIVSFDDFSDKSPGSKTD 373
           Y   ++ G  D + +   D ++DK PG++TD
Sbjct: 203 YPVTRTDGYTDKHPVTRTDGYTDKHPGTRTD 233


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 305 NDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSK 466
           ND+  + +  D+ +D      ++  T NDN N  +Y +      Y +N+ ++SK
Sbjct: 271 NDNSNDHIYNDNSNDHIYNDNSNDHTYNDNSNDHIYNDNSNDHIYNDNSNDNSK 324


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 329  SFDDFSDKSPGS-KTDLLTLNDNI--NYRLYYEADKQSKYLENNGESSKGIDSHTETSLN 499
            SF D SDKS GS  TD ++ + ++  +  +Y  AD  SK  +   + ++     ++ + +
Sbjct: 824  SFSDSSDKSSGSDNTDKMSSDKSVKQDSSIYANADMSSKVPDKGSDRNETAKVQSDKATS 883

Query: 500  GARNGS 517
               +GS
Sbjct: 884  ENNSGS 889


>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 365 KTDLLTLNDNINYRLYYEADKQSKYLENNGESS 463
           KT    LN+++   +YY  +K   YLENN E S
Sbjct: 125 KTTASELNESLGLGIYY-GNKFEHYLENNAEHS 156


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 446 NNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKT 571
           +  E SK I SH  TSL  +R+ S R L    V   KSG K+
Sbjct: 443 DQSERSKSIASHASTSL--SRSSSKRSLGRRSVESRKSGRKS 482


>SB_39073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 296 SGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINY 403
           +G  DDD +++   D SD   G   D + ++D+ NY
Sbjct: 158 NGDEDDDDDVLVVVDDSDDGVGDDNDKVVVDDSDNY 193


>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 392 NINYRLYYEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSG 562
           N+   +Y  A      L+ N  SSK      +  L   +N SF  LS S V F K+G
Sbjct: 407 NVMDAVYSVAYAVQALLKENTNSSKKTTISPKQLLGYIKNTSFAGLSGSVVSFDKNG 463


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 410 YYEADKQSKYLENNGESSKGIDSHTETSLNGARNGSFRKLSN 535
           Y++ DK+S YLE+N E S  +   T    +G+R  + +K +N
Sbjct: 241 YHKKDKESIYLESNKEQSNTV--ITTLKEHGSRIANSQKTAN 280


>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 413 YEADKQSKYLENNGESSKGIDSHTET 490
           YEAD   +  E +G S+K  DSH  T
Sbjct: 472 YEADLLEELQEKSGASAKSTDSHVST 497


>SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
 Frame = +2

Query: 263 KMPKIPYKPEKSGGNDDDYEIVSFD--DFSDKSPGSKTDLLTLNDNINYRLYYEADKQSK 436
           +M     K   +  N+ +Y   S++  D ++ S     +  + N+N N   Y E D  + 
Sbjct: 2   RMKTTTMKMTFNNSNNKNYNNNSYNENDNNNNSDNKNDNNNSDNENDNNNSYNENDNSNS 61

Query: 437 YLEN-NGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTHT 577
             EN N  S+   D++   + N   N +    +N+ +   K+   T T
Sbjct: 62  DNENDNNNSNNENDNNNSNNENDNNNSNNESDNNNIISITKTTVNTST 109


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 296 SGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYR 406
           S G DD     S  D    S   KTDLL  N+N+N++
Sbjct: 619 SVGTDDVISDTSDGDSLYTSETCKTDLLNTNNNVNWK 655


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,878,237
Number of Sequences: 59808
Number of extensions: 354871
Number of successful extensions: 1050
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)