BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P05_F_C09 (652 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 31 0.88 At1g47550.1 68414.m05278 expressed protein 29 2.0 At5g43720.1 68418.m05345 expressed protein 29 3.5 At2g07630.1 68415.m00881 hypothetical protein 29 3.5 At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 29 3.5 At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s... 28 4.7 At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 28 4.7 At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 28 6.2 At2g16070.2 68415.m01843 expressed protein 28 6.2 At2g16070.1 68415.m01842 expressed protein 28 6.2 At1g74930.1 68414.m08693 AP2 domain-containing transcription fac... 27 8.2 At1g47560.1 68414.m05279 expressed protein 27 8.2 At1g33070.1 68414.m04079 hypothetical protein 27 8.2 >At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1234 Score = 30.7 bits (66), Expect = 0.88 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +2 Query: 290 EKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESSKG 469 E +DDD ++ S D+SD+ S D L + I+Y YE D+ + L N + S+ Sbjct: 1107 EDDESSDDDDDLSSETDYSDECEDS--DDSDLGNEIDYSEDYE-DRDTSDLGNETDYSEE 1163 Query: 470 IDSHTETSL 496 + H + L Sbjct: 1164 YEDHDSSDL 1172 >At1g47550.1 68414.m05278 expressed protein Length = 887 Score = 29.5 bits (63), Expect = 2.0 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 299 GGNDDDYEIVSFDDFSDKSPGSKT-DLLTLNDNI 397 G +DDD I+ D+ +DK PG + DL LN+++ Sbjct: 556 GNDDDDLGIMDIDE-TDKKPGKNSPDLTALNESL 588 >At5g43720.1 68418.m05345 expressed protein Length = 329 Score = 28.7 bits (61), Expect = 3.5 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 290 EKSGGNDDDYEIVSFDDFSDKSPGSKTDLLTLNDNINYRLYYEADKQSKYLENNGESS 463 E++G DD +S DDF DK GS +D +D + + EA + +G SS Sbjct: 183 EETGSEDDGLLDLSDDDFFDK--GSSSDEADADDELTDKSAKEAASSASGRATSGMSS 238 >At2g07630.1 68415.m00881 hypothetical protein Length = 458 Score = 28.7 bits (61), Expect = 3.5 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -1 Query: 178 IFSLNNRRLFLKIYDTSSNYNWYAIVT*RCN 86 +F + ++ IYD +++WY IV +CN Sbjct: 248 MFDVGRVKVLCTIYDIDRDWSWYYIVCKKCN 278 >At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:1000090) [Gossypium barbadense] Length = 335 Score = 28.7 bits (61), Expect = 3.5 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +2 Query: 281 YKPEKSGGNDDDYEIVSFDDFSDKSPG---SKTDLLTLNDNINYRLYYEAD-KQSKYLEN 448 Y E+ N++ Y+ ++F++ +K + N+N NY Y+ + K+ + EN Sbjct: 147 YNNEEFNNNNNKYDANFKEEFNNNKYDENYAKEEFNNNNNNNNYNYKYDENVKEESFPEN 206 Query: 449 NGESSKGI 472 N ++ K + Sbjct: 207 NEDNKKNV 214 >At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein similar to 1,4-alpha-glucan branching enzyme [Solanum tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum tuberosum} SP|P30924; contains Pfam profiles: PF00128 Alpha amylase catalytic domain, PF02922 Isoamylase N-terminal domain Length = 777 Score = 28.3 bits (60), Expect = 4.7 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +2 Query: 419 ADKQSKYLENNGESSKGIDSHTETSLNGARNGS 517 ADK Y EN+ +S G S E G NGS Sbjct: 522 ADKMLSYAENHNQSISGGRSFAEILFGGVDNGS 554 >At2g17200.1 68415.m01986 ubiquitin family protein weak similarity to PLIC-2 (ubiquitin-like type II) [Homo sapiens] GI:9937505; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain Length = 551 Score = 28.3 bits (60), Expect = 4.7 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +2 Query: 440 LENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTHTP 580 L N G +++G D+ +S A G+ + P+G +GG+T P Sbjct: 291 LGNQGVTTQGSDASNNSSTPNAGTGTIPNANPLPNPWGATGGQTTAP 337 >At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to SP|P31244 DNA repair protein RAD16 {Saccharomyces cerevisiae}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 638 Score = 27.9 bits (59), Expect = 6.2 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 455 LHCFLDILIVYLLRNRDDNLCYHSKLINQFSNPEICRK 342 LH + L+V LLR R C H +L+N +S+ + RK Sbjct: 333 LHEHMAYLLVMLLRLRQ--ACNHPQLVNGYSHSDTTRK 368 >At2g16070.2 68415.m01843 expressed protein Length = 307 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 440 LENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTH 574 L+NN + S ++ NG +G R + + P G SGG +H Sbjct: 165 LDNNNGYLSHLPSKKKSDANGFGSGHVRNEAEAKSPNGGSGGSSH 209 >At2g16070.1 68415.m01842 expressed protein Length = 224 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 440 LENNGESSKGIDSHTETSLNGARNGSFRKLSNSFVPFGKSGGKTH 574 L+NN + S ++ NG +G R + + P G SGG +H Sbjct: 82 LDNNNGYLSHLPSKKKSDANGFGSGHVRNEAEAKSPNGGSGGSSH 126 >At1g74930.1 68414.m08693 AP2 domain-containing transcription factor, putative similar to AP2 domain containing protein RAP2.1 GI:2281627 from [Arabidopsis thaliana] Length = 195 Score = 27.5 bits (58), Expect = 8.2 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -2 Query: 630 SLDEDSFSFLDLTPLNNGV*VFPPDFPNGTKEFDNF 523 ++D D FSFLDL P+N G F DF +G D F Sbjct: 138 TVDYD-FSFLDLLPMNFGFDSFSDDF-SGFSGGDRF 171 >At1g47560.1 68414.m05279 expressed protein Length = 887 Score = 27.5 bits (58), Expect = 8.2 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 299 GGNDDDYEIVSFDDFSDKSPGSKT-DLLTLNDNI 397 G ++DD I+ D+ +DK PG + DL LN+++ Sbjct: 553 GNDNDDLGIMDIDE-ADKKPGKNSPDLTALNESL 585 >At1g33070.1 68414.m04079 hypothetical protein Length = 165 Score = 27.5 bits (58), Expect = 8.2 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +2 Query: 371 DLLTLNDNINYRLYYEADKQSKYLENNGESSKGIDSHTETSLNGA 505 DL L+ +I++ + + + + K L NNGESS + TS+ GA Sbjct: 37 DLQDLSFHIDHYIN-QLNSRVKILTNNGESSSSVPPLLHTSVAGA 80 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,644,055 Number of Sequences: 28952 Number of extensions: 253896 Number of successful extensions: 720 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 717 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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