Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_C04
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   119   4e-28
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   3.1  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   9.5  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    25   9.5  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  119 bits (286), Expect = 4e-28
 Identities = 56/101 (55%), Positives = 75/101 (74%)
 Frame = +3

Query: 351 QNYTFQTEVNRMMKLIINSLYRNKEIXLRELISNGXDALDKIRLMSLTDRGVLEANPELX 530
           + + F+ E++++M LIIN++Y NKEI LRELISN  DALDKIR  SL+D   L+A  +L 
Sbjct: 5   ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLF 64

Query: 531 IRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADF 653
           IRI  + + ++L I D+G+GMT+ DLINNLG IAKSGT  F
Sbjct: 65  IRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQF 105


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 175 PESSRTPSPKSQICFIAGVKNIQRDLDVNYSILNNCRKC*LTQVPSFN 32
           P ++   SP S+   +AG  N+Q  +D+ +   NN +K  +T V + N
Sbjct: 311 PRNTLIFSPNSRYILLAGFGNLQGSIDI-FDAANNMKK--ITTVEAAN 355


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 133 NIFGFSGSASCCFQDGARLKKGLAQWKRSQL 225
           N +    +A+C  +D A LKK +  WK  +L
Sbjct: 128 NTYYIVTNAACSEKDEANLKKHIENWKGVEL 158


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 282 REEEAISPDALSVAQMKELRDR--AQNYTFQTEVNRMMKLIINSLYRNKEIXLRELISNG 455
           ++EE  S  A ++  ++E  D   AQN   QT+++R+ + +  ++  N +   +++++ G
Sbjct: 216 KDEEIRSSQAFNMT-LREENDTLAAQNLDLQTQLDRLQRELDTNIRSNVKSKPKKIVTTG 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,947
Number of Sequences: 5004
Number of extensions: 31278
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)