Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B22
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30070.1 68414.m03676 SGS domain-containing protein similar t...    57   1e-08
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At2g44410.1 68415.m05523 expressed protein                             28   6.2  
At1g47300.1 68414.m05237 F-box family protein similar to hypothe...    27   8.2  

>At1g30070.1 68414.m03676 SGS domain-containing protein similar to
           calcyclin binding protein [Mus musculus] GI:3142331;
           contains Pfam profile PF05002: SGS domain
          Length = 222

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
 Frame = +1

Query: 133 QEIRSDIEEINDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEVS-PIPTTST 309
           +E+  D+EE+  L   AKR +V +L++ EI                  + V+ P P +S+
Sbjct: 3   EEVGLDLEELRQLQNIAKRPRVLNLINSEISNLEKLRDSAVSSNAKPKVPVTVPAPVSSS 62

Query: 310 SAPVQKK--YQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLE 483
             PV       V L  + WDQ +  VK+++ L+ V    +++V  +    S+++ + +++
Sbjct: 63  GKPVSSSALNYVTLGTFSWDQDNDKVKMYISLEGV---DEDKVQAEFKPMSLDIKIHDVQ 119

Query: 484 NKDYLLVINKLLEPINVADSHWKQKTDKVVIFLGK 588
            K+Y   I KL + I         K  ++VI + K
Sbjct: 120 GKNYRCAIPKLCKEIMPEKCKVLVKPKRIVITMVK 154


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 331 YQVKLNVYGWD-QSDKFVKVFVELKNVHTLPKEQVYCKLTD 450
           Y   L  YG   + D+  KVF E+K  H LP    Y  L D
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLID 522


>At2g44410.1 68415.m05523 expressed protein 
          Length = 413

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 571 LPYLFFVSNDCLPHL*VPI-TC**QASNLYFPDCPHAAPLIYLSIYNIPV 425
           +P  FF  N CL     PI TC     +L+   C +  PLIYL+I   PV
Sbjct: 118 VPGGFFDCNICLEKAEDPILTC---CGHLFCWGCFYQLPLIYLNIKECPV 164


>At1g47300.1 68414.m05237 F-box family protein similar to
           hypothetical protein GB:AAD22295 GI:4544385 from
           [Arabidopsis thaliana]
          Length = 306

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 286 SPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVY 435
           +PI     S P  K+Y+ +L+ +G+D  DK  K +  LK  ++L  ++ +
Sbjct: 134 NPITGRYASLPYLKRYRKELSFFGFDPIDKQFKEW--LKYAYSLRDDKFF 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,572
Number of Sequences: 28952
Number of extensions: 247584
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)