Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B21
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    31   0.19 
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    26   5.4  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   7.1  
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    25   7.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   7.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.1  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.1  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   9.4  

>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +2

Query: 344 IGDGFLLAVPKFRRTVEKRLNRKFGWPEYVWKPFVPKTNLKTCHECGHHHEQGRLCGNCY 523
           I +  LLAVPK + +  K+ +R         K    KT +  C  CG       LC +C+
Sbjct: 41  IWNSILLAVPKKKTSYTKKRSRLLSG-----KALKDKT-VNRCPICGSFKLAHHLCSHCF 94

Query: 524 KKIGKETKE 550
           + I +E  E
Sbjct: 95  RNIRREFNE 103


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 111 KETLKKKIKHCNHSTY 158
           KETL+ ++  C HSTY
Sbjct: 165 KETLRNQVARCLHSTY 180


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/85 (24%), Positives = 29/85 (34%)
 Frame = +2

Query: 224 NLERSILLSLFGHPPKELALAVSVNQQPKPTPKAFSIHDLIGDGFLLAVPKFRRTVEKRL 403
           N+ R   + L GH    L L  S     K    +F    ++ DG     P       K  
Sbjct: 420 NIIRKTGIQLLGHA--NLYLTTSQQIAKKYRVVSFPKLIVVRDGIASYYPAKMAQDNKDY 477

Query: 404 NRKFGWPEYVWKPFVPKTNLKTCHE 478
            R  GW +  W P +P+       E
Sbjct: 478 RRILGWMKNNWLPVLPELRTSNSKE 502


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 248 SLFGHPPKELALAVSVNQQPKPTPK 322
           S  G PPKE  L +++ +  KP P+
Sbjct: 85  SFTGPPPKEFLLELAMERNRKPLPQ 109


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 184 NVSKVHTSGPTFKKFRKIDPVKPFRSSSKRTS 279
           ++SKV T+GP+      I+ + P   SS+R+S
Sbjct: 565 SISKVTTNGPSETISEDIEEILPSLESSERSS 596


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 458 NLKTCHECGHHHEQGRLCG 514
           NL   H C HHHE   + G
Sbjct: 567 NLDNDHHCHHHHENHNMHG 585


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 386 TVEKRLNRKFGWPEYVWKPFV 448
           TV +++++K+  PEY+WKP V
Sbjct: 359 TVGRQVSKKY--PEYLWKPQV 377


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 158 SLRLLPILKMFPRFIQVVQHLKNLERSILLSLFGHPPKE 274
           S RLLP   ++P+FI       +L RS  L +F + P E
Sbjct: 566 SFRLLPNFTLYPQFI------FHLRRSPFLHIFNNSPDE 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,003
Number of Sequences: 5004
Number of extensions: 52910
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)