Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B21
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2010| Best HMM Match : Ribosomal_L32p (HMM E-Value=7.5e-06)         46   2e-05
SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_24991| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11)                 28   7.5  

>SB_2010| Best HMM Match : Ribosomal_L32p (HMM E-Value=7.5e-06)
          Length = 140

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 350 DGFLL-AVPKFRRTVEKRLNRKFGWPEYVWKPFVPKTNLKTCHECGHHHEQGRLCGNCYK 526
           +GFLL AVPK + T  K+  R     ++ W     +T+++ C  CG+H   G LCG C +
Sbjct: 55  EGFLLMAVPKRKTTPSKKKLRH----QHKW--LKNRTDIEVCAVCGNHKLLGHLCGQCLE 108

Query: 527 KIGKETKE 550
           K+  +T+E
Sbjct: 109 KVNVDTRE 116


>SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 470 CHECGHHHEQGRLCGNCYKKIGKETKEIQGE 562
           CH+CG  +   R+C +C K   + T E Q +
Sbjct: 203 CHKCGKRNHYARMCRSCAKTKDETTSERQDQ 233


>SB_24991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
 Frame = +2

Query: 452 KTNLKTCHECGHHHEQGR--------LCGNCYKK 529
           +TN K+C  CG+ H QGR         CG C KK
Sbjct: 206 QTNQKSCRFCGYKHRQGREHCKAWNQTCGACGKK 239


>SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11)
          Length = 735

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 191 PRFIQVVQHLKNLERSILLSLFGHPPKEL-ALAVSVNQQPKPTPKAFSIHDLIGDGFLLA 367
           P  I +V+ L  +   +  +L     K + A  V   ++   T  A    D + D FL  
Sbjct: 528 PYTIALVERLGEVREMVGKALTHDNVKRMSAEEVKKYEKRYETALASRTTDALADSFLKL 587

Query: 368 VPKFRRTVEKRLNRKFGW 421
             K   T+   L+R FGW
Sbjct: 588 TTKLHHTLLDGLHRNFGW 605


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,546
Number of Sequences: 59808
Number of extensions: 369019
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)