Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B21
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L09634-3|AAA27965.1|  168|Caenorhabditis elegans Hypothetical pr...    58   7e-09
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   6.6  
AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical ...    28   6.6  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   6.6  
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>L09634-3|AAA27965.1|  168|Caenorhabditis elegans Hypothetical
           protein C30C11.1 protein.
          Length = 168

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +2

Query: 242 LLSLFGH--PPKELALAVSVNQQPKPT----PKAF-SIHDLIGD-GFLLAVPKFRRTVEK 397
           L+ +F H  PP     A  V   P  T    P  + S+ ++I D   +  VPK+R +  K
Sbjct: 4   LMRVFSHRSPPPSFGFACDVGAHPSSTAQNLPMTYGSVREMIDDFSIVFGVPKYRTSKPK 63

Query: 398 RLNRKFGWPEYVWKPFVPKTNLKTCHECGHHHEQGRLCGNCYKKIGKETKEIQGEILK 571
           ++ RKF +   +     P  NL TC  C + H    +C  CY K+ + T EI+ ++++
Sbjct: 64  KVTRKFSFTRLLQ----PIDNLVTCPACSNIHPSDTICDACYAKVHQLTSEIKKKMMQ 117


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -2

Query: 360  KNPSPIKS*MEKALGVGFGC*LTETANASSFGG*PKRLNRIDLSKFFKCWTTCMNLGNIL 181
            +N + I   M K      G   +ET N     G   RL RI   +F + WT  +N  ++L
Sbjct: 2531 RNKTQILDGMGKLWSFILGIMASETKNWRLVVG---RLGRIGHGEF-RAWTHLLNKTSLL 2586

Query: 180  RMGNNLKDM 154
            R   +LKD+
Sbjct: 2587 RYSGSLKDI 2595


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -2

Query: 360  KNPSPIKS*MEKALGVGFGC*LTETANASSFGG*PKRLNRIDLSKFFKCWTTCMNLGNIL 181
            +N + I   M K      G   +ET N     G   RL RI   +F + WT  +N  ++L
Sbjct: 2531 RNKTQILDGMGKLWSFILGIMASETKNWRLVVG---RLGRIGHGEF-RAWTHLLNKTSLL 2586

Query: 180  RMGNNLKDM 154
            R   +LKD+
Sbjct: 2587 RYSGSLKDI 2595


>AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.6 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 467 TCHECGHHHEQGRLCGNCYKKIGKETKEIQG 559
           TC EC  H ++ R+C +C  + G   K   G
Sbjct: 93  TCSECKTHTDKLRICVDCLTRSGHVAKTENG 123


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -2

Query: 360  KNPSPIKS*MEKALGVGFGC*LTETANASSFGG*PKRLNRIDLSKFFKCWTTCMNLGNIL 181
            +N + I   M K      G   +ET N     G   RL RI   +F + WT  +N  ++L
Sbjct: 2531 RNKTQILDGMGKLWSFILGIMASETKNWRLVVG---RLGRIGHGEF-RAWTHLLNKTSLL 2586

Query: 180  RMGNNLKDM 154
            R   +LKD+
Sbjct: 2587 RYSGSLKDI 2595


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 423 GHPNFRFNLFSTVLLNFGTASKNPS 349
           GHPN++   F+ VLL  G + K+P+
Sbjct: 312 GHPNYKIGAFTVVLLE-GISRKHPA 335


>Z71177-7|CAI46554.1|  351|Caenorhabditis elegans Hypothetical
           protein AC3.10 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 461 LKTCHECGH-HHEQGRLCGNCYK 526
           LK C+ECGH   ++ R C +C K
Sbjct: 153 LKYCYECGHIKPDRARHCSSCGK 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,786
Number of Sequences: 27780
Number of extensions: 285588
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)