BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P05_F_B19 (407 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 120 1e-28 SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 118 3e-28 SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 1.5 SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 4.5 SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.9 >SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 1|||Manual Length = 89 Score = 120 bits (288), Expect = 1e-28 Identities = 52/84 (61%), Positives = 60/84 (71%) Frame = +2 Query: 32 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 211 MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60 Query: 212 XXXMRHLKIVRRRFRNGFKEGKPT 283 M +LK V R F+NGF+ GKPT Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPT 84 >SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 3|||Manual Length = 91 Score = 118 bits (285), Expect = 3e-28 Identities = 53/91 (58%), Positives = 61/91 (67%) Frame = +2 Query: 32 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 211 MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60 Query: 212 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 304 M +LK V R F+NGF+ GKP A A Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91 >SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 345 Score = 26.6 bits (56), Expect = 1.5 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -3 Query: 240 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 127 T+F + +PV+ + FT+ W N A +P A F Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234 >SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 Brl1|Schizosaccharomyces pombe|chr 3|||Manual Length = 692 Score = 25.0 bits (52), Expect = 4.5 Identities = 10/28 (35%), Positives = 11/28 (39%) Frame = +2 Query: 68 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 151 N H C C Y + S C QC P Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681 >SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 103 Score = 24.2 bits (50), Expect = 7.9 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = -2 Query: 340 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 245 IFIYL+ + Y +L R F +KT IT+ P Sbjct: 17 IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,393,463 Number of Sequences: 5004 Number of extensions: 25294 Number of successful extensions: 53 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 53 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 140222766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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