Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B14
         (459 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q61VC3 Cluster: Putative uncharacterized protein CBG048...    35   0.97 
UniRef50_A0BWJ4 Cluster: Chromosome undetermined scaffold_132, w...    33   3.9  
UniRef50_Q49552 Cluster: Oligopeptide transport system permease ...    32   5.2  

>UniRef50_Q61VC3 Cluster: Putative uncharacterized protein CBG04897;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG04897 - Caenorhabditis
           briggsae
          Length = 297

 Score = 34.7 bits (76), Expect = 0.97
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 388 MRLRCLVIFFIQLVDFI*ARRQRHHCYRHGHYAY*QKRESK-SRLYHV 248
           M+L CL+I F+ LV    A R RHH  RHG +    KR  K  ++ HV
Sbjct: 1   MKLLCLLILFLALVSLASAHRHRHH--RHGKFT--GKRPKKIVKIIHV 44


>UniRef50_A0BWJ4 Cluster: Chromosome undetermined scaffold_132,
           whole genome shotgun sequence; n=5; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_132,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 947

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 185 HPRYLFVFLTIPNTKKKFNAQNKI 114
           HP+ LFVFL I N  K FN Q  I
Sbjct: 316 HPKILFVFLNIVNNSKLFNQQTNI 339


>UniRef50_Q49552 Cluster: Oligopeptide transport system permease
           protein homolog; n=1; Mycoplasma hominis|Rep:
           Oligopeptide transport system permease protein homolog -
           Mycoplasma hominis
          Length = 381

 Score = 32.3 bits (70), Expect = 5.2
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +2

Query: 254 IKPRFAFALLLICIVSVTIAVVPLSSSSNEINQLYKENYQATE 382
           I  R AFA+L + I+S+ + V+  +  +N +N L +  +QA++
Sbjct: 5   ILQRIAFAILTLFIISIFVYVLVAAFGNNPVNDLAQAQFQASK 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,344,870
Number of Sequences: 1657284
Number of extensions: 7507804
Number of successful extensions: 18933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18926
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)