Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B14
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    28   0.60 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   1.4  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    26   3.2  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    25   4.2  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.3  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 220 LIESQFYYSNLVTRDIYLFF*RFRILKKNL 131
           L ES   YS+L+T+DI L F  F+++ + L
Sbjct: 346 LFESMLGYSDLLTKDISLIFPDFKLVLQQL 375


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 342 SFELDDSGTTAIVTDTMHISRSAKANLGFIMFNKTFLASEN*LNLNF 202
           SF LDDS T +I      +   AKANL    F ++ ++ E  LN  +
Sbjct: 546 SFTLDDSNTESIKKRFDSLKEEAKANLEEQGFTESQISYELFLNCRY 592


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 290 CIVSVTIAVVPLSSSSNEINQLYK 361
           CI +  I   PL S  +E++QLYK
Sbjct: 262 CIFAEMITRTPLFSGKSELDQLYK 285


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 314 VVPLSSSSNEINQLYKENYQ 373
           +V L   S+EI Q YK+N+Q
Sbjct: 21  IVKLIDRSSEIKQAYKQNFQ 40


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 191 IRIVKLRFN*FSLARKVLLNMIKPRFAFALLLICI 295
           + ++ +R N F L   +++N+I     FA    CI
Sbjct: 16  LELLSIRINIFGLQLNIIINLIPLVLLFAFFCPCI 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,534
Number of Sequences: 5004
Number of extensions: 34477
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)