Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B14
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0087 - 11580046-11580261,11580495-11580620,11581530-115818...    29   1.4  
03_02_0390 + 8056006-8057502                                           27   5.5  
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991...    27   5.5  
05_01_0446 - 3551754-3551795,3551932-3552397,3552424-3552921,355...    27   7.3  

>06_02_0087 -
           11580046-11580261,11580495-11580620,11581530-11581875,
           11582433-11582572,11583273-11583677
          Length = 410

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 381 SVAW*FSLYNWLISFELDDSGTTAIVTDTMHI 286
           S+AW +   +WL   E+ D GT +I+   M +
Sbjct: 110 SMAWSYYYDSWLFPIEISDRGTASILVQGMEV 141


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 357 IKKITKQRRRIVPTCYRNQGLKNLDG 434
           ++K+++++ RIVP+C+   G    DG
Sbjct: 266 VRKLSRRKNRIVPSCFSANGGSGDDG 291


>01_01_1227 +
           9912646-9913056,9913306-9913413,9913517-9913672,
           9914110-9914325,9914436-9914645,9914722-9914859,
           9915076-9915177,9915508-9915603
          Length = 478

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 417 VPGFCSTWVQCASVAW*FSLYNWLISFELDDSGTTAIVTDTMHISRSAKANLG 259
           V  FC  W     + W  + YN ++ F L +SG   ++     ++ +  AN G
Sbjct: 345 VSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLP---WLTMAVSANFG 394


>05_01_0446 -
           3551754-3551795,3551932-3552397,3552424-3552921,
           3553288-3553334
          Length = 350

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 437 YPI*VLKSLVSVARGYNAPPLLGNFLYTIG*FH 339
           Y + +++S +  + GY+  PLL N + T+G +H
Sbjct: 296 YTMKLMESGLVCSNGYSGGPLLNNDVQTVGTYH 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,147,705
Number of Sequences: 37544
Number of extensions: 193690
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)