Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B12
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         28   7.6  

>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 292 LCSHYHLLHFLVFTTYSLIITIW---KHLW*LCGLLPQQC 402
           LC   H    LVF  ++L++ +W    HL+  CG     C
Sbjct: 471 LCLPVHTCAALVFARFTLVLRLWSLGSHLYCACGRSVHTC 510


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 49  STIAKSKMFEHSVKVPRHYKIAANILKKVSTEGGSVKTLLYDDKLRHFIN*EW-RTVMRV 225
           ST+   +  EHS  V +      N LKKV T  G  K  +    L++ I+  W R +  +
Sbjct: 326 STLELMEELEHSQGVQKEQCFEINCLKKVCTVKGEAKDEII--HLKNVISALWERYLSTL 383

Query: 226 HLY 234
           H+Y
Sbjct: 384 HMY 386


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 49  STIAKSKMFEHSVKVPRHYKIAANILKKVSTEGGSVKTLLYDDKLRHFIN*EW-RTVMRV 225
           ST+   +  EHS  V +      N LKKV T  G  K  +    L++ I+  W R +  +
Sbjct: 274 STLELMEELEHSQGVQKEQCFEINCLKKVCTVKGEAKDEII--HLKNVISALWERYLSTL 331

Query: 226 HLY 234
           H+Y
Sbjct: 332 HMY 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,724
Number of Sequences: 59808
Number of extensions: 324898
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)