Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B09
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.0  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   6.7  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 ISSLPVPTQKNTETVNTLT 359
           ISS P+P   +T T  TLT
Sbjct: 156 ISSTPLPPTTSTTTRTTLT 174


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -3

Query: 649 LIHNLLDIMKTR*AEGNLAQCFSVGISNCKQMWNGNSDAKHQFELPSWYSSANCMSNEST 470
           +IHNLL        E N AQ   V +S  +++    +D   +F   S    A      ST
Sbjct: 216 IIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTST 275

Query: 469 VH 464
            H
Sbjct: 276 NH 277


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 523 TDVLHHCYHSTFVY 564
           +D LHH  H T +Y
Sbjct: 39  SDKLHHPIHQTVIY 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,925
Number of Sequences: 336
Number of extensions: 3409
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)