Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B09
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)            32   0.47 
SB_3673| Best HMM Match : CT20 (HMM E-Value=1.9)                       30   1.9  
SB_2669| Best HMM Match : Strep_his_triad (HMM E-Value=8.8)            29   2.5  
SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   2.5  
SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)                 29   4.3  
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_35997| Best HMM Match : Phage_fiber (HMM E-Value=0.78)              28   7.6  

>SB_45570| Best HMM Match : Euplotes_phero (HMM E-Value=2.6)
          Length = 388

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 440 HLWYICFEYFKHPFNAV-CRATDTSSNFSQSVYCFC 336
           H+W  C EY +H  + V C  T+ S +    V+C C
Sbjct: 283 HVWCTCTEYSEHMVHHVWCTCTEYSEHMVHHVWCTC 318



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 440 HLWYICFEYFKH-PFNAVCRATDTSSNFSQSVYCFC 336
           H+W  C EY +H   +  C  T+ S +    V+C C
Sbjct: 313 HVWCTCTEYSEHMVHHEWCTCTEYSEHMVHHVWCTC 348


>SB_3673| Best HMM Match : CT20 (HMM E-Value=1.9)
          Length = 183

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 550 NGNSDAKHQFELPSWYSSANCMS 482
           +G+ DA  + ELPSW+SSA+ +S
Sbjct: 99  HGDIDAISEVELPSWFSSASSIS 121


>SB_2669| Best HMM Match : Strep_his_triad (HMM E-Value=8.8)
          Length = 186

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
 Frame = +2

Query: 116 YIFHNERIVFKSYSGT*EDWCLGRRDSHRSKGIYDTKQIT*IN*RYSYNTRLR*STRYIG 295
           YI H   +    Y+ T + +    R     + + D + IT  + RY  N R     RY+ 
Sbjct: 50  YITHARYLDDNRYT-THDRYLNNNRYITHDRYLNDNRYIT--HDRYLNNNRYITHDRYLD 106

Query: 296 EGNIITTSTYAEEHRNSKHFD*-SWRRYQWLCRQH*RGA*STQNIYTKGG--VRHRRYCV 466
           +    T + Y +++R   H      +RY    R        T + Y      + H RY  
Sbjct: 107 DNRYTTHARYVDDNRYITHDRYLDDKRYITHDRYLNNNRYITHDRYLNNNRYITHARYLD 166

Query: 467 DSRFVTHA 490
           D+R++THA
Sbjct: 167 DNRYITHA 174


>SB_50643| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 471

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 224 WYHKFLCFYVSPFCPNTNLLRFRNRI*KRFVHYEIC 117
           +Y K  CF      P++ L ++RN+  K +  YE C
Sbjct: 151 YYEKLTCFLNCSAIPSSELWKYRNKTRKEWPPYEHC 186


>SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)
          Length = 466

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 440 HLWYICFEYFKHPFNAVCRATDTSSNFSQSV 348
           ++WY+C +YF   +N  CR  +   N+++ +
Sbjct: 100 NVWYLCTQYF--VYNCKCRLRNIIENYAEDI 128


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 354 LTEVGGGISGSADSIEGVLEVLKTYIPKVESDIA 455
           LT +  G+SG  DS    LEVL+T   K+E ++A
Sbjct: 343 LTGIVRGVSG-VDSERDALEVLRTQAEKIEEELA 375


>SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 375 ISGSADSIEGVLEVLKTYIPKVES 446
           ++   D+++ VL+V +TY PK++S
Sbjct: 88  LTAQRDNVQDVLKVTRTYAPKIDS 111


>SB_35997| Best HMM Match : Phage_fiber (HMM E-Value=0.78)
          Length = 197

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 294 EKEISSLPVPTQKNTETVNTL 356
           ++ ++++P+PT  NT T+NTL
Sbjct: 40  QQHLTTIPLPTPYNTTTINTL 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,083,016
Number of Sequences: 59808
Number of extensions: 373287
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)