Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B09
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18980.1 68416.m02409 F-box family protein contains Pfam:PF00...    31   0.88 
At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase fa...    30   1.5  
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    29   2.7  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   4.7  
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    28   4.7  
At2g26570.1 68415.m03187 expressed protein contains Pfam profile...    28   6.2  
At1g04670.1 68414.m00464 expressed protein ; expression supporte...    27   8.2  

>At3g18980.1 68416.m02409 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 415

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 348 NTLTEVGGGISGSADSIEGVLEVLKTYIPKV 440
           N + EVG G   + DS+EG+ +V+  Y P +
Sbjct: 369 NKVDEVGSGEGEATDSLEGISQVILNYAPSL 399


>At3g60290.1 68416.m06739 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase 1
           [SP|Q96330], gibberellin 20-oxidase [GI:9791186];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 316

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/63 (22%), Positives = 36/63 (57%)
 Frame = +3

Query: 30  KLLNYYIYTFYIKPKLNSSVIYIYIKVNCTYFIMNESFLNPIPEPKKIGVWAEGTHIEAK 209
           +++N+ I +  +K   +S+  +  +  +    +++++F  P+ E  K+G +AE TH+  K
Sbjct: 84  QVINHGISSAVVKDAQDSATRFFDLPADEKMHLVSDNFQEPVRE--KVGKYAEATHVLHK 141

Query: 210 EFM 218
           + +
Sbjct: 142 QLI 144


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 345 VNTLTEVGGGISGSA--DSIEGVLEVLKTYIPKVESDIADTVWTVDSLLMQLAEEYQE 512
           V  +  +GG  S SA  + +   ++ LKTY+P++   + D+V     L  ++ EE ++
Sbjct: 140 VREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRK 197


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 108 VNCTYFIMNESFLNPIPEPKKIGVWAEGTHIEAKEFMIPNKSPES 242
           +N T+     +FL P+P  K +  W E T  + +++    ++ +S
Sbjct: 185 MNPTFEQPKAAFLKPLPSQKALTDWVEHTSADGRKYFFNKRTKKS 229


>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 345 VNTLTEVGGGISGSA--DSIEGVLEVLKTYIPKVESDIADTVWTVDSLLMQLAEEYQE 512
           V  +  +GG  S SA  + +   ++ LKTY+P++   + D+V     L  ++ EE ++
Sbjct: 136 VREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRK 193


>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           weak similarity to merozoite surface protein 3 alpha
           (GI:27596802) [Plasmodium vivax]
          Length = 807

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 306 SSLPVPTQKNTETVNTLTEVGGGISGSADSIEGVLEVLKTYIPKVES---DIADTVWTVD 476
           SSL +  +K   T+ ++ +  G  S +  SIE  ++  ++ I  V+S   D  + +  + 
Sbjct: 491 SSLQLELEKEKSTLASIKQREGMASIAVASIEAEIDRTRSEIASVQSKEKDAREKMVELP 550

Query: 477 SLLMQLAEEYQEGNS 521
             L Q AEE  E  S
Sbjct: 551 KQLQQAAEEADEAKS 565


>At1g04670.1 68414.m00464 expressed protein ; expression supported
           by MPSS
          Length = 126

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 324 TQKNTETVNTLTE-VGGGISGSADSIEGVLEVLKTYI 431
           T+K TET +T+TE   G +SG   + +   +++K  I
Sbjct: 86  TEKVTETTDTITEKAKGSVSGVLGTAKNATDIIKNKI 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,651
Number of Sequences: 28952
Number of extensions: 262496
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)