Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_B08
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 63 3e-11
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 1.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.1
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 7.2
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 63.3 bits (147), Expect = 3e-11
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 13/120 (10%)
Frame = +2
Query: 86 KVRNVLLLLADDGGF-EIGAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLT 262
K N L+++ADD G+ ++ + ++I TPNI+ LA+ G+ N F + S+CSP+R+ LL+
Sbjct: 10 KKPNFLVIVADDLGWSDVSPFGSEI-HTPNIERLAKEGVRLTN-FHTASACSPTRSMLLS 67
Query: 263 GSPSHQNGMYGLHHGVHHFNSF------------DNVTSLPNLLRQNGIMTGIIGKKHVG 406
G+ +H G+ + V F+ D V +LP +L++ G T + GK H+G
Sbjct: 68 GTDNHIAGLGQMAETVRRFSKVWGGKPGYEGYLNDRVAALPEILQEAGYYTTMSGKWHLG 127
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 275 HQNGMYGLHHGVHHFNSFDNVTSLPNLLRQNGI 373
H G + HH HH +S D+ S P +QN +
Sbjct: 295 HHEGHHHHHHHHHHHHSHDDDPSSPAEKKQNHV 327
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Frame = +2
Query: 137 GAYRNKICQTPNIDELARNGLLFNNAFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHH 316
G Y NKI + ++ NG+ F V S A T + + H +
Sbjct: 302 GVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQ 361
Query: 317 FNSFDNVT---SLPNLLRQ-NGIMTGIIGKKHVGPSSVYQFDYEQTEEN 451
N N+ LP++ ++ I +K P +F+ E T+EN
Sbjct: 362 MNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQEN 410
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 333 LSKELKWWTPWCSPYIPFW*LGDPVRSAARLGEQLLTDVNALL 205
+++ LK+ T + +P + L DP A +L + DVNALL
Sbjct: 612 VNRTLKFTTAKYNGLVPHY-LTDPSVGAGKLKADFVKDVNALL 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,309
Number of Sequences: 5004
Number of extensions: 49883
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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