BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P05_F_B05 (650 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 297 5e-81 SB_22305| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_57471| Best HMM Match : TatC (HMM E-Value=0.27) 28 7.6 >SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) Length = 523 Score = 297 bits (729), Expect = 5e-81 Identities = 138/158 (87%), Positives = 148/158 (93%) Frame = +2 Query: 101 LFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGD 280 +FDDVRRMNKRQ YQVL+F +IVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAF RGD Sbjct: 6 MFDDVRRMNKRQLFYQVLNFAIIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFQRGD 65 Query: 281 LLFLTNYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGL 460 LLFLTNY E+P+RVGEIVVFKVEGR+IPIVHRVLK+HEK NG +KFLTKGDNNSVDDRGL Sbjct: 66 LLFLTNYKEDPIRVGEIVVFKVEGREIPIVHRVLKVHEKENGDIKFLTKGDNNSVDDRGL 125 Query: 461 YAQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFK 574 YA GQLWL KKDVVGRARGF+PYVGMVTI MN+YPKFK Sbjct: 126 YAPGQLWLAKKDVVGRARGFVPYVGMVTILMNDYPKFK 163 >SB_22305| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 357 Score = 29.9 bits (64), Expect = 1.9 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -1 Query: 500 PHLF**ATVGPGHTSLCHQRYYCHLWLR 417 PHL T+ P +CH +++ +LW++ Sbjct: 41 PHLVLPITIEPNKPRMCHDKHFSNLWIK 68 >SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1574 Score = 29.1 bits (62), Expect = 3.3 Identities = 19/83 (22%), Positives = 39/83 (46%) Frame = +2 Query: 119 RMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTN 298 R+ K + +++ G+ ++ ++I G+ + S VV+L G A G +LF+ Sbjct: 144 RIKKYDMLEKLVIAGLALTVLVIISFGITMQNCFLSIFVVLLYGYYPQAIQTGTVLFINT 203 Query: 299 YPEEPVRVGEIVVFKVEGRDIPI 367 + + V +V GRD+ + Sbjct: 204 LKTKKFGSPKESVIEVHGRDLTV 226 >SB_57471| Best HMM Match : TatC (HMM E-Value=0.27) Length = 687 Score = 27.9 bits (59), Expect = 7.6 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Frame = -3 Query: 393 SCSFNTL*TIGISRPSTLKTTISPTRTGSSG*LVKN---SKSPL*KAGSILPDSTTTIGL 223 S S+NT T ST T ISP+ + LV + S+S L + +++P +T+I L Sbjct: 448 SVSYNTTLTPAPDETSTAATAISPSSVANMTTLVSSVNLSRSSL--STTLIPSISTSI-L 504 Query: 222 SLPVTTIKPFHIIK-AEDTI-IPKLNTWYMNCRLFIRRTSSNRLSNIV 85 S T I F+ + TI + +N ++ I T+ R+++ + Sbjct: 505 SYNTTVIATFNTTRLVTSTISLSTVNVSALSTTSSIESTTMARVASFI 552 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,424,260 Number of Sequences: 59808 Number of extensions: 445635 Number of successful extensions: 1345 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1275 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1657237625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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