Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B05
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   5.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 211 YYHQTFPYHQGRRHYHTKA*HLVHELPLVHSPH 113
           + H T P+H    H H    H  H  PL HS +
Sbjct: 425 HIHAT-PHHH---HSHAATPHHQHSTPLAHSSY 453


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 645 FQI*RFCHSLCTNT*IARQASTANLNLGYSFIYMVTIPTYGKN 517
           FQI R  H L  +  + R   T  +N+  S +  + + T G+N
Sbjct: 107 FQI-RMKHGLIRDLIVDRDVPTWEVNILKSIVGQLQVDTQGEN 148


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 85  NNVGKSI**CAANEQAAVHVPSVKL 159
           N V K I  C+A   A +H+ S KL
Sbjct: 95  NEVNKLITECSAISDADIHLKSSKL 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,716
Number of Sequences: 438
Number of extensions: 4098
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)