BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P05_F_B05 (650 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g52600.1 68414.m05938 signal peptidase, putative similar to S... 215 3e-56 At3g15710.1 68416.m01991 signal peptidase, putative similar to S... 206 7e-54 At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F... 28 4.7 At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 28 6.2 At2g46400.1 68415.m05775 WRKY family transcription factor 28 6.2 At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 27 8.2 At2g02040.1 68415.m00139 peptide transporter (PTR2-B) / oligopep... 27 8.2 >At1g52600.1 68414.m05938 signal peptidase, putative similar to SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-) {Canis familiaris}; contains Pfam profile PF00461: Signal peptidase I Length = 180 Score = 215 bits (524), Expect = 3e-56 Identities = 103/173 (59%), Positives = 130/173 (75%), Gaps = 1/173 (0%) Frame = +2 Query: 107 DDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLL 286 D ++ + RQ Q +S GMIV+SAL+IWK LM VTGSESP+VVVLSGSMEP F RGD+L Sbjct: 9 DSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKRGDIL 68 Query: 287 FLTNYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEK-NNGTVKFLTKGDNNSVDDRGLY 463 FL + ++P+R GEIVVF V+GRDIPIVHRV+K+HE+ N G V LTKGDNN DDR LY Sbjct: 69 FL-HMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVHERENTGEVDVLTKGDNNYGDDRLLY 127 Query: 464 AQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 622 A+GQLWL + ++GRA GFLPYVG VTI M E P K+ ++ L + V+ ++ Sbjct: 128 AEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180 >At3g15710.1 68416.m01991 signal peptidase, putative similar to SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-) {Canis familiaris}; contains Pfam profile: PF00461 signal peptidase I Length = 180 Score = 206 bits (504), Expect = 7e-54 Identities = 97/173 (56%), Positives = 128/173 (73%), Gaps = 1/173 (0%) Frame = +2 Query: 107 DDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLL 286 D ++ + RQ + Q ++ GMIV+SAL+IWK L+ VTGSESP+VVVLS SMEP F RGD+L Sbjct: 9 DSIKSIKIRQVLTQAITLGMIVTSALIIWKALICVTGSESPVVVVLSESMEPGFQRGDIL 68 Query: 287 FLTNYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNG-TVKFLTKGDNNSVDDRGLY 463 FL +EP+R GEIVVF V+GR+IPIVHR +K+HE+ + V LTKGDNN +DD GLY Sbjct: 69 FL-RMTDEPIRAGEIVVFSVDGREIPIVHRAIKVHERGDTKAVDVLTKGDNNDIDDIGLY 127 Query: 464 AQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 622 A+GQLWL + ++GRA GFLPYVG VTI M E P K+ ++ L + V+ ++ Sbjct: 128 AEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180 >At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F-box domain PF:00646 Length = 375 Score = 28.3 bits (60), Expect = 4.7 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%) Frame = +2 Query: 473 QLWLTKKDVVGRARGF---LPYVGMVTIYMNEYPKFKF 577 ++WLTK ++ R G + ++ ++T+ + +PKF F Sbjct: 259 KIWLTKNNINDREVGLEEDVVWINLMTVLIPNFPKFSF 296 >At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein similar to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00646: F-box domain Length = 1378 Score = 27.9 bits (59), Expect = 6.2 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 365 IVHRVLKLHEKNNGTVKFLTKGDNNSVDD 451 +V R+ KLHE N ++ K DN++++D Sbjct: 1139 LVDRLRKLHEGNKKSILSFNKTDNDNLED 1167 >At2g46400.1 68415.m05775 WRKY family transcription factor Length = 295 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +2 Query: 341 KVEGRDIPIVHRVLKLHEKNNGTVKFL--TKGDNNSVDD 451 +++G+D V + K+ EKN VK T+ +N S+DD Sbjct: 67 EIDGKDSKNVFKKRKVSEKNTEKVKVFVATEQENGSIDD 105 >At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam profile PF00400: WD domain, G-beta repeat Length = 512 Score = 27.5 bits (58), Expect = 8.2 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +2 Query: 239 VLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVE 349 + SGS++P H D+ + P + ++ + VFK E Sbjct: 453 ITSGSVDPVIHVFDIRYNARKPTQSIKAHQKRVFKAE 489 >At2g02040.1 68415.m00139 peptide transporter (PTR2-B) / oligopeptide transporter 1-1, putative (OPT1-1) identical to peptide transporter PTR2-B SP:P46032 from [Arabidopsis thaliana]; contains Pfam profile: PF00854 POT family; identical to cDNA NT1 GI:510237 Length = 585 Score = 27.5 bits (58), Expect = 8.2 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Frame = +2 Query: 113 VRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 292 VR+ + + Y ++ G +VSS+L++W G I V G +F G L+ Sbjct: 195 VRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYR 254 Query: 293 TNYP-EEPV-RVGEIVVFKVEGRDIPIVHRVLKLHE 394 P P+ R+ ++VV + + L+E Sbjct: 255 FQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYE 290 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,207,082 Number of Sequences: 28952 Number of extensions: 295909 Number of successful extensions: 745 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 726 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 741 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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