Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B05
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52600.1 68414.m05938 signal peptidase, putative similar to S...   215   3e-56
At3g15710.1 68416.m01991 signal peptidase, putative similar to S...   206   7e-54
At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F...    28   4.7  
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    28   6.2  
At2g46400.1 68415.m05775 WRKY family transcription factor              28   6.2  
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf...    27   8.2  
At2g02040.1 68415.m00139 peptide transporter (PTR2-B) / oligopep...    27   8.2  

>At1g52600.1 68414.m05938 signal peptidase, putative similar to
           SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC
           3.4.-.-) {Canis familiaris}; contains Pfam profile
           PF00461: Signal peptidase I
          Length = 180

 Score =  215 bits (524), Expect = 3e-56
 Identities = 103/173 (59%), Positives = 130/173 (75%), Gaps = 1/173 (0%)
 Frame = +2

Query: 107 DDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLL 286
           D ++ +  RQ   Q +S GMIV+SAL+IWK LM VTGSESP+VVVLSGSMEP F RGD+L
Sbjct: 9   DSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKRGDIL 68

Query: 287 FLTNYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEK-NNGTVKFLTKGDNNSVDDRGLY 463
           FL +  ++P+R GEIVVF V+GRDIPIVHRV+K+HE+ N G V  LTKGDNN  DDR LY
Sbjct: 69  FL-HMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVHERENTGEVDVLTKGDNNYGDDRLLY 127

Query: 464 AQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 622
           A+GQLWL +  ++GRA GFLPYVG VTI M E P  K+ ++  L + V+  ++
Sbjct: 128 AEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180


>At3g15710.1 68416.m01991 signal peptidase, putative similar to
           SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC
           3.4.-.-) {Canis familiaris}; contains Pfam profile:
           PF00461 signal peptidase I
          Length = 180

 Score =  206 bits (504), Expect = 7e-54
 Identities = 97/173 (56%), Positives = 128/173 (73%), Gaps = 1/173 (0%)
 Frame = +2

Query: 107 DDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLL 286
           D ++ +  RQ + Q ++ GMIV+SAL+IWK L+ VTGSESP+VVVLS SMEP F RGD+L
Sbjct: 9   DSIKSIKIRQVLTQAITLGMIVTSALIIWKALICVTGSESPVVVVLSESMEPGFQRGDIL 68

Query: 287 FLTNYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNG-TVKFLTKGDNNSVDDRGLY 463
           FL    +EP+R GEIVVF V+GR+IPIVHR +K+HE+ +   V  LTKGDNN +DD GLY
Sbjct: 69  FL-RMTDEPIRAGEIVVFSVDGREIPIVHRAIKVHERGDTKAVDVLTKGDNNDIDDIGLY 127

Query: 464 AQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 622
           A+GQLWL +  ++GRA GFLPYVG VTI M E P  K+ ++  L + V+  ++
Sbjct: 128 AEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180


>At1g51320.1 68414.m05771 F-box family protein (FBX11) contains
           F-box domain PF:00646
          Length = 375

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +2

Query: 473 QLWLTKKDVVGRARGF---LPYVGMVTIYMNEYPKFKF 577
           ++WLTK ++  R  G    + ++ ++T+ +  +PKF F
Sbjct: 259 KIWLTKNNINDREVGLEEDVVWINLMTVLIPNFPKFSF 296


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein similar
            to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
            pombe}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 365  IVHRVLKLHEKNNGTVKFLTKGDNNSVDD 451
            +V R+ KLHE N  ++    K DN++++D
Sbjct: 1139 LVDRLRKLHEGNKKSILSFNKTDNDNLED 1167


>At2g46400.1 68415.m05775 WRKY family transcription factor
          Length = 295

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 341 KVEGRDIPIVHRVLKLHEKNNGTVKFL--TKGDNNSVDD 451
           +++G+D   V +  K+ EKN   VK    T+ +N S+DD
Sbjct: 67  EIDGKDSKNVFKKRKVSEKNTEKVKVFVATEQENGSIDD 105


>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 512

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 239 VLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVE 349
           + SGS++P  H  D+ +    P + ++  +  VFK E
Sbjct: 453 ITSGSVDPVIHVFDIRYNARKPTQSIKAHQKRVFKAE 489


>At2g02040.1 68415.m00139 peptide transporter (PTR2-B) /
           oligopeptide transporter 1-1, putative (OPT1-1)
           identical to peptide transporter PTR2-B SP:P46032 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00854
           POT family; identical to cDNA NT1 GI:510237
          Length = 585

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +2

Query: 113 VRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 292
           VR+ +   + Y  ++ G +VSS+L++W       G    I  V  G    +F  G  L+ 
Sbjct: 195 VRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYR 254

Query: 293 TNYP-EEPV-RVGEIVVFKVEGRDIPIVHRVLKLHE 394
              P   P+ R+ ++VV       + +      L+E
Sbjct: 255 FQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYE 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,082
Number of Sequences: 28952
Number of extensions: 295909
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)