Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_B03
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    30   0.34 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    29   0.77 
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    27   2.4  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    26   4.1  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   5.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   5.5  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   7.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.5  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 320 KDNQNPKIFKSADCFLFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALK 493
           KD  NP+I +    F+ + H++    +  AFD   DV K   T+  I  K IP + L+
Sbjct: 675 KDTVNPEIDEQLANFVVSSHIR----SHPAFDPNMDVLKKVPTETGIDAKPIPQDLLR 728


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
 Frame = +2

Query: 206 VATAFVQSKSXHHQKRATR--PNI--CDLVYNNTLDVRCYCTKDNQNPKIFKSADCFLFA 373
           V   + QS   H   + TR  P      L+    L    +    N+N K  +  D F + 
Sbjct: 376 VIQCYDQSTGRHCAIKVTRAIPKYREASLIELRVLQTIAHSDPTNEN-KCIQLRDYFDYR 434

Query: 374 EHVKPEDDT--WTAFDYLKDVTKLTFTKNNITM---KYIPTEALKYTKSVLNLDIKYGNI 538
           +H+    D   W+ FD+LK+   + F   +I M   +   + A  ++  +++ D+K  N+
Sbjct: 435 KHICIVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLFKSVAFLHSLGLVHTDLKPENV 494


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +2

Query: 248 KRATRPNIC-----DLVYNNTLDVRCYCTKDNQNPKIFKSADCFLFAEHV 382
           +R+ R  IC     ++  +NTL   C   KDN+  KI+    CF+  + V
Sbjct: 72  RRSCREGICGSCAMNINGSNTLACICNIKKDNKPTKIYPLPHCFIVKDLV 121


>SPAC12B10.15c |||ribonuclease H2 complex
          subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 98 HCTIQISNETHSSNSLC 48
          H  IQISN THS  ++C
Sbjct: 41 HDKIQISNNTHSKTTVC 57


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 458 ITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQ 583
           +T++ +     KY     NLD      EK  A  FAN SAVQ
Sbjct: 186 LTIEALVVNLSKYLCFTKNLDDISIKAEKPSAITFANASAVQ 227


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 119 TVVFKQKIGTVIFNMSTNMNFWRVIAVMCVATAFVQSKSXHHQKRATRPNICDL 280
           +VV +   G V        N   V+   C   A + ++  HH +R   PNI  L
Sbjct: 35  SVVGEGSFGKVYLAAHLLTNTKVVLKSSCRKQAIILAREIHHHRRLLHPNITRL 88


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 287 NNTLDVRCYCTKDNQNPKIFKSADCFLFAEHVKPEDD 397
           +N +D      K+N +  I + AD F FA+++  +DD
Sbjct: 136 SNRIDASQLNEKENDSFTINQEADIFNFAKYLHSKDD 172


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 77  NETHSSNSLCPPRKHVYAPSRPYLN 3
           N+ H + S  PP  + Y P  PY++
Sbjct: 580 NDWHGNPSTVPPPTNPYNPGYPYMD 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,017
Number of Sequences: 5004
Number of extensions: 46918
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)